Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05780 and RBAM_034980
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:17
# Commandline: needle
# -asequence dna-align/BSNT_05780___rocA.1.9828.seq
# -bsequence dna-align/RBAM_034980___rocA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05780___rocA-RBAM_034980___rocA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05780___rocA-RBAM_034980___rocA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05780___rocA
# 2: RBAM_034980___rocA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1558
# Identity: 1234/1558 (79.2%)
# Similarity: 1234/1558 (79.2%)
# Gaps: 20/1558 ( 1.3%)
# Score: 4811.0
#
#
#=======================================
BSNT_05780___ 1 ATGACAGTCACATACGCGCACGAACCATTTACCGATTTTACGGAAGCAAA 50
||||||||..|||||||.||||||||||||||..|||||..|||||..|.
RBAM_034980__ 1 ATGACAGTTTCATACGCACACGAACCATTTACAAATTTTCAGGAAGAGAC 50
BSNT_05780___ 51 GAATAAA-ACTGCATTTGGGGAGTCATTGGCCTTTGTAAACACTCAGCTC 99
.|||||| |.| |.|||..|||..|..||||.|.||||||..|.||||||
RBAM_034980__ 51 AAATAAACAAT-CGTTTCAGGAAGCGCTGGCTTATGTAAATTCACAGCTC 99
BSNT_05780___ 100 GGCAAGCATTATCCGCTTGTCATAAATGGAGAAAAAATTGAAACGGACCG 149
||||||||||||||||||.||||.||.||.|||...|||||||||||...
RBAM_034980__ 100 GGCAAGCATTATCCGCTTATCATCAACGGTGAAGCGATTGAAACGGATAA 149
BSNT_05780___ 150 CAAAATCATTTCCATTAACCCGGCAAATAAAGAAGAGATCATTGG----G 195
.||.|||||||||.|.||.||||||.|||||.||||..|.||.|| |
RBAM_034980__ 150 AAAGATCATTTCCGTCAATCCGGCAGATAAAAAAGAAGTGATCGGTTCTG 199
BSNT_05780___ 196 TACGCGTCTACAG-CGGATCAAGAGCTTGCTGAAAAAGCGATGCAAGCCG 244
|| ||..||| |||| .||||.|||||.|||||.||.|||||.||.|
RBAM_034980__ 200 TA----TCGGCAGCCGGA-AAAGAACTTGCGGAAAAGGCCATGCAGGCTG 244
BSNT_05780___ 245 CATTGCAGGCATTTGATTCCTGGAAAAAACAAAGACCGGAGCACCGCGCG 294
|..|||||||||||.|..|.|||||||||..|.|.|||||.|||||||||
RBAM_034980__ 245 CGCTGCAGGCATTTCAAACATGGAAAAAAGTACGGCCGGAACACCGCGCG 294
BSNT_05780___ 295 AATATTCTCTTTAAGGCAGCGGCTATTTTGCGCAGAAGAAAGCATGAATT 344
|||.|.||.|||||.||.|||||.||..|.||||||||||||||.|||||
RBAM_034980__ 295 AATGTGCTGTTTAAAGCGGCGGCGATCATCCGCAGAAGAAAGCACGAATT 344
BSNT_05780___ 345 TTCAAGC-TATCTTGTGAAGGAAGCGGGAAAACCGTGGAAGGAAGCAGAT 393
.|| .|| |||||.|||||.||||||||||||||||||||||||||.|||
RBAM_034980__ 345 CTC-CGCATATCTAGTGAAAGAAGCGGGAAAACCGTGGAAGGAAGCGGAT 393
BSNT_05780___ 394 GCGGACACGGCTGAAGCGATAGACTTTTTAGAGTTCTACGCGCGCCAAAT 443
|||||.|||||.||||||||.|||||||||||||..|||||.||.||.||
RBAM_034980__ 394 GCGGATACGGCGGAAGCGATCGACTTTTTAGAGTATTACGCCCGTCAGAT 443
BSNT_05780___ 444 GTTAAAGCTCAAGGAAGGGGCTCCGGTGAAGAGCCGTGCTGGCGAGTTCA 493
|.|.||.||.||.||.||..|.||.||.||||||||||..||.||.|..|
RBAM_034980__ 444 GCTGAAACTGAAAGACGGTTCCCCTGTAAAGAGCCGTGACGGAGAATATA 493
BSNT_05780___ 494 ATCAATATCATTACGAAG-CGCTTGGCGTCGGCATCGTCATTTCTCCATT 542
||||.|||||.|| .||| |||||||.||.||.||||||||.||||||||
RBAM_034980__ 494 ATCAGTATCACTA-TAAGCCGCTTGGGGTGGGGATCGTCATCTCTCCATT 542
BSNT_05780___ 543 TAACTTCCCGCTCGCGATTATGGCGGGAACAGCGGCGGCAGCGATTGTGA 592
.|||||||||||.|||||||||||||||||.|||||||||||.||.||.|
RBAM_034980__ 543 CAACTTCCCGCTTGCGATTATGGCGGGAACGGCGGCGGCAGCCATCGTAA 592
BSNT_05780___ 593 CAGGAAATACGATTCTCTTAAAACCGGCTGACGCAGCCCCGGTAGTGGCA 642
||||.||.|||||.||..|.||||||||.||.||.||.||.||.|||||.
RBAM_034980__ 593 CAGGCAACACGATACTGCTGAAACCGGCGGATGCGGCGCCTGTCGTGGCG 642
BSNT_05780___ 643 GCAAAATTTGTCGAGGTCATGGAGGAAGCGGGTCTGCCAAACGGCGTTCT 692
||.|||||.||.||.||.|||.|.||||||||.|||||..|||||||.||
RBAM_034980__ 643 GCGAAATTCGTTGAAGTGATGAAAGAAGCGGGCCTGCCGGACGGCGTGCT 692
BSNT_05780___ 693 -GAATTACATTCCGGGAGATGGAGCGGAGATCGGTGA-TTTCTTAGTTGA 740
.|||| |||.|||||.||.||||..||.|||||.|| |.|| |.|||||
RBAM_034980__ 693 CCAATT-CATACCGGGCGACGGAGGAGAAATCGGCGACTATC-TGGTTGA 740
BSNT_05780___ 741 GCATCCGAAGACACGGTTTGTCTCATTTACAGGTTCCCGTGCAGTCGGCT 790
||||||||||||..|.|||||.||.||||||||||||||.||.||.||.|
RBAM_034980__ 741 GCATCCGAAGACGAGATTTGTGTCGTTTACAGGTTCCCGCGCGGTTGGAT 790
BSNT_05780___ 791 GCCGGATTTATGAGCGAGCCGCCAAAGTGCAGCCGGGCCAAAAATGGCTC 840
||||.||||||||.||.|||||.|||||.||||||||||||||.|||||.
RBAM_034980__ 791 GCCGTATTTATGAACGCGCCGCAAAAGTACAGCCGGGCCAAAAGTGGCTG 840
BSNT_05780___ 841 AAACGGGTAATTGCAGAAATGGGCGGAAAAGACACAGTGCTTGTCGACAA 890
||||||||.||.||.||||||||.||.|||||.||.||||||||.||||.
RBAM_034980__ 841 AAACGGGTCATCGCCGAAATGGGAGGGAAAGATACGGTGCTTGTAGACAG 890
BSNT_05780___ 891 GGACGCTGATCTTGACCTTGCTGCATCCTCTATCGTGTACTCAGCATTTG 940
.||.|||||||||||.|||||.||.|||||.||||||||.||.||.||.|
RBAM_034980__ 891 AGATGCTGATCTTGATCTTGCCGCTTCCTCAATCGTGTATTCCGCCTTCG 940
BSNT_05780___ 941 GATATTCAGGACAGAAGTGTTCTGCGGGCTCCCGCGCGGTCATTCATCAG 990
|||..|||||.||.||.|||||.||.||.|||||.|||||.||.||||||
RBAM_034980__ 941 GATTCTCAGGCCAAAAATGTTCAGCCGGTTCCCGTGCGGTAATCCATCAG 990
BSNT_05780___ 991 GATGTTTATGATGAAGTGGTGGAAAAAGCTGTGGCGCTGACCAAAACGCT 1040
||.||.|||||||||||.||.||||||||.||.||..|.||.|||.|.||
RBAM_034980__ 991 GACGTCTATGATGAAGTTGTTGAAAAAGCCGTCGCTTTAACAAAATCACT 1040
BSNT_05780___ 1041 GACTGTCGGCAATCCAGAAGATCCTGATACGTATATGGGTCCCGTGATTC 1090
.||.|||||.|.|||.||||||..||||||.||.|||||.||.||.||.|
RBAM_034980__ 1041 CACCGTCGGAAGTCCGGAAGATTTTGATACATACATGGGGCCAGTCATCC 1090
BSNT_05780___ 1091 ATGAAGCATCCTACAACAAAGTGATGAAATACATTGAAATCGGCAAATCT 1140
|.||||||||.||.||.|||||.||||..||.||.||||||||||||.|.
RBAM_034980__ 1091 ACGAAGCATCTTATAATAAAGTCATGAGGTATATCGAAATCGGCAAAACA 1140
BSNT_05780___ 1141 GAAGGCAAGCTATTGGCCGGCGGAGAAGGCGATGATTCAAAAGGCTACTT 1190
|||||.||.||..||.|.||.||.|||||.||||||||||||||.|||||
RBAM_034980__ 1141 GAAGGAAAACTCCTGACGGGAGGCGAAGGTGATGATTCAAAAGGATACTT 1190
BSNT_05780___ 1191 TATTCAGCCGACGATCTTTGCAGATGTTGATGAAAACGCCCGCTTGATGC 1240
||||||||||||.||.|||||.|||||||||||||||||||||.||||||
RBAM_034980__ 1191 TATTCAGCCGACCATTTTTGCGGATGTTGATGAAAACGCCCGCCTGATGC 1240
BSNT_05780___ 1241 AGGAAGAAATTTTCGGCCCGGTTGTTGCGATTTGCAAAGCGCGTGATTTC 1290
||||.|||||||||||.|||||.||.|||||.|..|||||.|||||||||
RBAM_034980__ 1241 AGGAGGAAATTTTCGGGCCGGTCGTCGCGATCTCAAAAGCCCGTGATTTC 1290
BSNT_05780___ 1291 GATCATATGCTGGAGATTGCCAATAACACGGAATACGGATTAACAGGTGC 1340
||.||||||||.||||||||||||||.||.||.||||||.|.||.||.||
RBAM_034980__ 1291 GACCATATGCTTGAGATTGCCAATAATACCGATTACGGACTGACGGGCGC 1340
BSNT_05780___ 1341 GCTTCTGACGAAAAACCGTGCGCACATTGAACGGGCGCGCGAGGATTTCC 1390
.||..|..||||||.||||||||||||||||||.||.|||||.|||||.|
RBAM_034980__ 1341 TCTGTTATCGAAAACCCGTGCGCACATTGAACGCGCCCGCGAAGATTTTC 1390
BSNT_05780___ 1391 ATGTCGGAAACCTATATTTTAACAGAGGATGTACCGGAGCAATTGTCGGC 1440
|.|||||.||.|||||.||.|||.|.||||||||.|||||.||||||||.
RBAM_034980__ 1391 ACGTCGGGAATCTATACTTCAACCGCGGATGTACGGGAGCGATTGTCGGA 1440
BSNT_05780___ 1441 TATCAGCCGTTCGGCGGTTTTAATATGTCAGGAACAGACTCAAAAGCAGG 1490
||.||||||||||||||.||.||||||||||||||.||.||||||||.||
RBAM_034980__ 1441 TACCAGCCGTTCGGCGGCTTCAATATGTCAGGAACCGATTCAAAAGCCGG 1490
BSNT_05780___ 1491 CGGTCCCGATTACTTAATTCTTCATATGCAAGCCAAAACAACGTCCGAAG 1540
.||.||.||.||..|.||||||||||||||.||.|||||||||||.||||
RBAM_034980__ 1491 AGGACCTGACTATCTGATTCTTCATATGCAGGCAAAAACAACGTCTGAAG 1540
BSNT_05780___ 1541 CTTTTTGA 1548
|.|.||.|
RBAM_034980__ 1541 CCTATTAA 1548
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