Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05777 and RBAM_034940
See
Amino acid alignment /
Visit
BSNT_05777 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:16
# Commandline: needle
# -asequence dna-align/BSNT_05777___ywfA.1.9828.seq
# -bsequence dna-align/RBAM_034940___ywfA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05777___ywfA-RBAM_034940___ywfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05777___ywfA-RBAM_034940___ywfA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05777___ywfA
# 2: RBAM_034940___ywfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1261
# Identity: 952/1261 (75.5%)
# Similarity: 952/1261 (75.5%)
# Gaps: 44/1261 ( 3.5%)
# Score: 3497.5
#
#
#=======================================
BSNT_05777___ 1 ATGAACAGCAATCAAAACAATGACATCAAAACAAAACATCATTTTCCGTT 50
|||||||||||.||||.|.||.|||||.||||.||||..|..||||||
RBAM_034940__ 1 ATGAACAGCAAACAAACCGATCACATCGAAACGAAACGCCGATTTCCG-- 48
BSNT_05777___ 51 AT-TGT-TGGCACTGGCTTTAACGATGGGGGTATTTGCAGCCGGATCTGA 98
|| ||| |.||.||.|||||.||..|.||.||||||||.|||||.|||||
RBAM_034940__ 49 ATCTGTCTCGCGCTTGCTTTGACATTAGGCGTATTTGCCGCCGGTTCTGA 98
BSNT_05777___ 99 AGAGCTTGTGATCTCACCGCTGCTGCCGGATTTAGCAAAAGCCTTCAACT 148
||||||.|||||.||.||||||||.|||||||||||..|.||.||||.||
RBAM_034940__ 99 AGAGCTGGTGATTTCTCCGCTGCTTCCGGATTTAGCGCAGGCTTTCAGCT 148
BSNT_05777___ 149 CAGATGTCAGCGTCCTTGCGTTATCTATCAGTATTTACGGCATT-ATGAT 197
|.||||||||.||.||.|||.|.||.|||||||||||||| ||| |||||
RBAM_034940__ 149 CGGATGTCAGTGTGCTGGCGCTTTCCATCAGTATTTACGG-ATTGATGAT 197
BSNT_05777___ 198 TTTTATCGGTGCGCCGCTTTTGGTTCCATTAGGCGATAAATACTCCAGAG 247
|||||||||.|||||||||.|.|||||..|.||.||||||||.|||.|.|
RBAM_034940__ 198 TTTTATCGGCGCGCCGCTTCTCGTTCCGCTGGGAGATAAATATTCCCGGG 247
BSNT_05777___ 248 AACTGAGCTTATTGGCCGGGCTTATGATCTTTATCATAGGAACCGTGATA 297
||||.|||.|..||||.|||||..|.||.||||.....||.||.|||||.
RBAM_034940__ 248 AACTCAGCCTGCTGGCGGGGCTGCTTATATTTACGGCCGGCACGGTGATC 297
BSNT_05777___ 298 TGCGCTTTGGCTCAAAATATTTTTTTCTTCTTTTTAGGCCGGGCGCTTTC 347
|||||..||||.||.|||.|.||||||||||||.|.|||.||||||||||
RBAM_034940__ 298 TGCGCGCTGGCGCACAATCTCTTTTTCTTCTTTCTGGGCAGGGCGCTTTC 347
BSNT_05777___ 348 GGGATTGGCTGCGGGAGCGTTTGTTCCGACCGCTTACGCAGTTGTCGGTG 397
.||..|.||.|||||.||||||||.|||||.||.||.||.||.|||||.|
RBAM_034940__ 348 CGGGCTCGCGGCGGGTGCGTTTGTGCCGACAGCATATGCGGTGGTCGGCG 397
BSNT_05777___ 398 ATCGTGTTCCTTATACATACCGGGGCAAGGTGATGGGACTGATCGTTTCA 447
|.|||||.||||||.|.|||||.||||||||||||||.||||||||.|||
RBAM_034940__ 398 ACCGTGTGCCTTATGCGTACCGCGGCAAGGTGATGGGTCTGATCGTGTCA 447
BSNT_05777___ 448 AGCTGGTCGCTGGCGCTGATTTTCGGAGTGCCGCTCGGATCATTTATCGG 497
|||||||||||.||..||||||||||.||.|||.||||.||.||||||||
RBAM_034940__ 448 AGCTGGTCGCTCGCTTTGATTTTCGGTGTTCCGATCGGCTCTTTTATCGG 497
BSNT_05777___ 498 CGGCGTCCTGCATTGGAGATGGACGTTTTGGATTTTCGCCCTGATGGGTG 547
|||.||..||.|||||.|.|||||||||||||||||||||.|||||..||
RBAM_034940__ 498 CGGTGTTTTGAATTGGCGGTGGACGTTTTGGATTTTCGCCATGATGTCTG 547
BSNT_05777___ 548 TTTTAGTTGTCCT--GCTGATTCTCCTTGAAATGCGCCGC--CATGCCCA 593
|..|.|||| || |||.|||.||.||||...||||||| ||.|.|..
RBAM_034940__ 548 TCCTCGTTG--CTTCGCTCATTTTCATTGAGGCGCGCCGCAGCACGGCGG 595
BSNT_05777___ 594 A----CATAAAAACAGCGGCAAGGAAGAAATAGAAGAGCCGGCAGGAACA 639
| .|| ||||||| |.||.||||..|.|..||.||||||.||.
RBAM_034940__ 596 ATGGGGAT-AAAACAG-----AAGAGGAAAACGGACGGCAGGCAGGCACT 639
BSNT_05777___ 640 TTCCGGGATGCGCTGAAAGTCCCTCGTGTACCTGTTTATATCACGATAAC 689
|||||||||||||||||.||.||.|||||.|||||.||..|||||||.||
RBAM_034940__ 640 TTCCGGGATGCGCTGAAGGTGCCCCGTGTCCCTGTATACCTCACGATCAC 689
BSNT_05777___ 690 CTTCTGTAATATGATTGGTTTTTACGGTATGTATTCCTTTTTAGGCACCT 739
.||.||.||.|||||.|||||||||||.||||||||||||.|.|||||.|
RBAM_034940__ 690 TTTTTGCAACATGATCGGTTTTTACGGCATGTATTCCTTTCTCGGCACAT 739
BSNT_05777___ 740 ATCTTCAGGACGTTTTTACCGGAGGAAACACGGCTGC-GGGCTTATTTAT 788
|||||||...|||..|..|.||.|||||.||.|||.| |||| |..|.||
RBAM_034940__ 740 ATCTTCACCGCGTGCTGCCGGGGGGAAATACAGCTTCAGGGC-TGCTGAT 788
BSNT_05777___ 789 CATGATTTATGGAATCGGGTTTTCCATGAGTGTGATTACAGGAAAGATAG 838
||||.|.||.||||||||.|||||||||||.|||.|.||.|||||.||.|
RBAM_034940__ 789 CATGGTGTACGGAATCGGTTTTTCCATGAGCGTGTTCACCGGAAAAATCG 838
BSNT_05777___ 839 CCGA----CCGCATCGGAAAAATGCGCTCCCTTTTGATTGCG---CTGGG 881
|.|| .|| ||.||||||||||| ||||||.||| .|||.
RBAM_034940__ 839 CAGATAAGGCG----GGGAAAATGCGCTC---TTTGATCGCGGCATTGGC 881
BSNT_05777___ 882 GGTCATCAGCGTTCTGCTGGCGTGTTTACCATATGCGCCGGCGTCTAT-- 929
.||.||||||.|...|||..|.|||.|..|.|||||||||.|.||.||
RBAM_034940__ 882 CGTGATCAGCATATGGCTTTCCTGTCTCGCCTATGCGCCGTCATCAATGC 931
BSNT_05777___ 930 -GTTTCTGTTAATCGCCAGCCTATTTATTTGGGGATTAATGCAAAGTTTG 978
||||.||.|.|||| |..||||..|.||||||||.||||||||..||
RBAM_034940__ 932 CGTTTTTGGTCATCG---GGTTATTCGTCTGGGGATTGATGCAAAGCCTG 978
BSNT_05777___ 979 ACGGTGACGCTGCTCAGCACCATTTTGAGTGACTGCTCAGAGCGTCATCG 1028
||||||||..||||||||||||||||.|||||.||||||.||.|.|..||
RBAM_034940__ 979 ACGGTGACCTTGCTCAGCACCATTTTAAGTGATTGCTCACAGAGCCGCCG 1028
BSNT_05777___ 1029 AGGAAAAGTCATGGTGTTTTACAGTCTCGCCTCGAATCTGGCCGTGACAT 1078
.||.|||.||||||..|||||||||||.||.||.|||.|||||||.||.|
RBAM_034940__ 1029 GGGCAAAATCATGGCATTTTACAGTCTGGCGTCCAATTTGGCCGTCACCT 1078
BSNT_05777___ 1079 TAGGTTCTGCTTTAATGGGACCCGTATATGTGGCATACGGCTATGCAGCT 1128
|.|||||||||.|.|||||.||.||.|||||.|.||||||.|||||||||
RBAM_034940__ 1079 TGGGTTCTGCTGTCATGGGTCCGGTCTATGTCGGATACGGATATGCAGCT 1128
BSNT_05777___ 1129 GTCGGATTGATTTGCGCCGCCATCACAGTCCTCGGATTTGTGCTCAGTGT 1178
||||||||.|||||.||.|||.||||..||.||||.|||||.|||||.||
RBAM_034940__ 1129 GTCGGATTTATTTGTGCGGCCGTCACCCTCATCGGCTTTGTCCTCAGCGT 1178
BSNT_05777___ 1179 ATTCGCATATAAAAAGTACGGCAAACTTGAGCAGAAGGCCGATCAGTCCT 1228
.||||||||.|.||.|||.||.|||..||||||..|||||||.||..|.|
RBAM_034940__ 1179 TTTCGCATACAGAAGGTATGGGAAATATGAGCATCAGGCCGACCAAACAT 1228
BSNT_05777___ 1229 TATCTCAATAA 1239
|.|.||..|||
RBAM_034940__ 1229 TGTATCGGTAA 1239
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.