Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_05766 and RBAM_034860

See Amino acid alignment / Visit BSNT_05766 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:16
# Commandline: needle
#    -asequence dna-align/BSNT_05766___ywfI.1.9828.seq
#    -bsequence dna-align/RBAM_034860___ywfI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05766___ywfI-RBAM_034860___ywfI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05766___ywfI-RBAM_034860___ywfI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05766___ywfI
# 2: RBAM_034860___ywfI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 765
# Identity:     641/765 (83.8%)
# Similarity:   641/765 (83.8%)
# Gaps:           0/765 ( 0.0%)
# Score: 2709.0
# 
#
#=======================================

BSNT_05766___      1 ATGAGTGAACAGCAAATGACGAATGAAGCGGCAAAAACGCTTGACGGCTG     50
                     ||||||||.|||||||..|||||.|||||.||..||||||||||||||||
RBAM_034860__      1 ATGAGTGAGCAGCAAAAAACGAACGAAGCCGCCCAAACGCTTGACGGCTG     50

BSNT_05766___     51 GTATGCGCTTCATGATTTCCGCACAATGGATTGGACTTCCTGGAAGCTTC    100
                     |||.||||||||.|||||||||||||||||.|||||.||.||||||.|..
RBAM_034860__     51 GTACGCGCTTCACGATTTCCGCACAATGGACTGGACGTCATGGAAGATGT    100

BSNT_05766___    101 TGTCCAGTGATGAGCGCCAATCTATCATACATGAATTCACTGGGTTGCTT    150
                     |.|||||.||||||||||..||.||.||.||.|||||.||.||..|||||
RBAM_034860__    101 TATCCAGCGATGAGCGCCTGTCGATTATTCACGAATTTACGGGACTGCTT    150

BSNT_05766___    151 GAAAAATGGGGCGTAGCCCAAAAAGAAGGAAAAGGATCGCAAACTCTTTA    200
                     ||||||||||||||.||||||||||||||.|||||.||||||||..|.||
RBAM_034860__    151 GAAAAATGGGGCGTCGCCCAAAAAGAAGGCAAAGGCTCGCAAACCATCTA    200

BSNT_05766___    201 CAGCATCGTCGGCCAAAAAGCTGATTTTATGCTGATGATCCTTCGTCCTA    250
                     ||||||||||||.||.|||||||||||||||||||||||.|||||.||.|
RBAM_034860__    201 CAGCATCGTCGGACAGAAAGCTGATTTTATGCTGATGATTCTTCGCCCGA    250

BSNT_05766___    251 CAATGGAAGAATTAAATCAAATTGAGCTTGAATTCAACAAATCAAGACTT    300
                     ||||||||||..|.||..||||.|||||||||||.||||||||||..|||
RBAM_034860__    251 CAATGGAAGAGCTGAACGAAATCGAGCTTGAATTTAACAAATCAAAGCTT    300

BSNT_05766___    301 GCTGAGTTCACCATTCCGGCATACTCCTACGTATCAGTGGTAGAGCTGAG    350
                     |||||.||.||.||.|||||.||.||.|||||.||.|||||.||||||||
RBAM_034860__    301 GCTGAATTTACAATCCCGGCTTATTCTTACGTGTCCGTGGTTGAGCTGAG    350

BSNT_05766___    351 CAACTACTTGGCAAGCGGTGACGGCGATCCTTACGAAAATCCGCATGTGC    400
                     |||||||.|.||||||||.||.||||||||.||.||||||||||||||.|
RBAM_034860__    351 CAACTACCTCGCAAGCGGAGAAGGCGATCCGTATGAAAATCCGCATGTCC    400

BSNT_05766___    401 GCGCGCGCCTTTACCCTGAACTGCCGGAATCAAAATATGTATGCTTCTAT    450
                     ||||.|||||.||.|||||.|||||.|||.|.|||||.||.|||||||||
RBAM_034860__    401 GCGCCCGCCTGTATCCTGAGCTGCCTGAAGCGAAATACGTCTGCTTCTAT    450

BSNT_05766___    451 CCAATGGATAAAAGAAGATCCGGCAACGACAACTGGTATATGCTTTCAAT    500
                     ||.|||||||||||||||..||||||.|||||||||||.||||||||.||
RBAM_034860__    451 CCGATGGATAAAAGAAGAAGCGGCAATGACAACTGGTACATGCTTTCTAT    500

BSNT_05766___    501 GGAGGAACGCAGAAACTTGATGAGAAGCCACGGTTTAATCGGCCGCAGCT    550
                     |||.||||||||||||.||||||||||||||||.||.|||||.||.||||
RBAM_034860__    501 GGATGAACGCAGAAACCTGATGAGAAGCCACGGCTTGATCGGACGGAGCT    550

BSNT_05766___    551 ATGCGGGCAAAGTCAAACAGATCATCACCGGCTCTGTCGGCTTTGACGAT    600
                     ||||.|||||||||||||||||.|||||.||.||||||||.|||||||||
RBAM_034860__    551 ATGCCGGCAAAGTCAAACAGATTATCACGGGATCTGTCGGTTTTGACGAT    600

BSNT_05766___    601 TACGAGTGGGGCGTTACATTATTCAGCGATGATGTCCTTCAATTCAAGAA    650
                     |||||.||||||||.||..|.||||||||||||||.|||||.|||||.||
RBAM_034860__    601 TACGAATGGGGCGTCACGCTCTTCAGCGATGATGTGCTTCAGTTCAAAAA    650

BSNT_05766___    651 GCTAGTGTACGAAATGCGTTTTGACGAAGTCAGCGCTCGCTATGGCGAAT    700
                     .||.||.|||||||||||.|||||.|||||||||||.|||||.|||||||
RBAM_034860__    651 ACTTGTTTACGAAATGCGCTTTGATGAAGTCAGCGCGCGCTACGGCGAAT    700

BSNT_05766___    701 TTGGTTCATTCTTTGTCGGCAATCACCTTTCGCTTGATACACTTCCTCAA    750
                     |.||||||||.||||||||.||.|.|.|.||.||.||.||.|||||..|.
RBAM_034860__    701 TCGGTTCATTTTTTGTCGGAAACCGCTTGTCTCTCGACACGCTTCCGAAG    750

BSNT_05766___    751 TTCTTATATGTATAA    765
                     ||.||..|.||.|||
RBAM_034860__    751 TTTTTGCACGTGTAA    765


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.