Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05756 and RBAM_034730

See Amino acid alignment / Visit BSNT_05756 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:15
# Commandline: needle
#    -asequence dna-align/BSNT_05756___rsfA.1.9828.seq
#    -bsequence dna-align/RBAM_034730___rsfA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05756___rsfA-RBAM_034730___rsfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05756___rsfA-RBAM_034730___rsfA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05756___rsfA
# 2: RBAM_034730___rsfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 795
# Identity:     621/795 (78.1%)
# Similarity:   621/795 (78.1%)
# Gaps:          39/795 ( 4.9%)
# Score: 2469.5
# 
#
#=======================================

BSNT_05756___      1 ATGACAAAACAGCGACAAGACGCTTGGTCAGAGGAAAACGATCTGCTTTT     50
                     .||||||||||..||||.|||||.|||||.|||||||||||.|||||..|
RBAM_034730__      1 TTGACAAAACAAAGACAGGACGCCTGGTCGGAGGAAAACGACCTGCTGCT     50

BSNT_05756___     51 AGCCGAAACAGTGCTTCGGCATGTGAGGGAGGGCAGCACTCAGCTGAACG    100
                     .||.|||||.|||||.|||||.||..||||.||.|||||.||||||||||
RBAM_034730__     51 TGCGGAAACCGTGCTCCGGCACGTCCGGGAAGGAAGCACGCAGCTGAACG    100

BSNT_05756___    101 CCTTTGAAGAAGTCGGCGATAAATTAAACCGGACATCCGCAGCCTGCGGA    150
                     ||||||||||.||.|||||||||||||||.|.||.||.|||||.|||||.
RBAM_034730__    101 CCTTTGAAGAGGTAGGCGATAAATTAAACAGAACGTCGGCAGCGTGCGGT    150

BSNT_05756___    151 TTCAGATGGAACGCAGTGGTCCGCCATCAATATGAAAAAGCGCTTCAGCT    200
                     |||||||||||.||.||.||.|||||||||||.|||||||||||||||||
RBAM_034730__    151 TTCAGATGGAATGCCGTCGTGCGCCATCAATACGAAAAAGCGCTTCAGCT    200

BSNT_05756___    201 TGCGAAGAAACAACGAAAACAGCGGATGAGAGCGCTCGGAAACGGGCAGC    250
                     |||.||.|||||.||.||||||||||||.|.||||||||||||||.||||
RBAM_034730__    201 TGCCAAAAAACAGCGGAAACAGCGGATGCGCGCGCTCGGAAACGGCCAGC    250

BSNT_05756___    251 CCGCGAAAAAAAGATTATTATATCAGCCTCCTG--CCGTTGATCCTGAAA    298
                     |.||.||.||.|.|.|||||||||||||.||||  |||  |||.|.||.|
RBAM_034730__    251 CGGCCAAGAAGAAACTATTATATCAGCCGCCTGCACCG--GATGCGGACA    298

BSNT_05756___    299 TCATTCAAGAAACCGCTGCAGAAGAGCCGGTTAAAACGGAAACACCTTCT    348
                     ||||.||.||||||||.||.||||||.|||||.||||||||.|.||    
RBAM_034730__    299 TCATGCAGGAAACCGCAGCCGAAGAGACGGTTCAAACGGAAGCGCC----    344

BSNT_05756___    349 GTCGAAAATGA------GCAACCTTTAATGTCTGGCGAACATATGCCTTT    392
                          |||.||      ||||.|..|.|||||.||||||||||||||||.
RBAM_034730__    345 -----AAAAGAGGATCGGCAAGCCGTCATGTCCGGCGAACATATGCCTTA    389

BSNT_05756___    393 TGTTGATGAAAGCTTTAAGGAAGAGTTAGCTAGTCTATCACACTTATTGT    442
                     |||.|||||||||||.||||||||||||||||||.|||||||.||..||.
RBAM_034730__    390 TGTCGATGAAAGCTTCAAGGAAGAGTTAGCTAGTTTATCACATTTGCTGG    439

BSNT_05756___    443 CTCCTCAAACACCTGCAGCTGCGC-------CTGAGATGACGATGAATGA    485
                     |.|||||       |||||.|.||       |.|||.|.||.|||...||
RBAM_034730__    440 CGCCTCA-------GCAGCCGAGCCAAAAGGCGGAGCTCACAATGGCAGA    482

BSNT_05756___    486 TGTGATCCGCTTCCTGCAGAATTACGAAGGCAATAACG---AGCAATCAT    532
                     .||.||.|..||.|||||||..||.||||||   |.||   |||||.|.|
RBAM_034730__    483 CGTCATTCAATTTCTGCAGAGCTATGAAGGC---AGCGGAAAGCAAACTT    529

BSNT_05756___    533 CAGCATTAAAAATGGAAAACGAGCGTTTAAAGAAAGAAAATCAGGAATTG    582
                     |.||..|..||||||||||.||.||||||||....|||||.||.|||.|.
RBAM_034730__    530 CCGCCCTGCAAATGGAAAATGACCGTTTAAAACGGGAAAACCAAGAACTT    579

BSNT_05756___    583 CAAAACAAAACAGAGCAGCTAGAGGCAGAAGTTCAAAAGCTTGAAAAAGA    632
                     ||....|||||.||||||||.||.||.|..||..||||||||||||||||
RBAM_034730__    580 CAGTCTAAAACCGAGCAGCTGGAAGCGGCCGTCGAAAAGCTTGAAAAAGA    629

BSNT_05756___    633 CCAAAAAACGATCCAAGAAGATTATGAAACCTTGGTGAAAATTATGAACA    682
                     .||||||||.||.||.|||||.||.|||||||||||.|||||||||||||
RBAM_034730__    630 TCAAAAAACCATTCAGGAAGACTACGAAACCTTGGTAAAAATTATGAACA    679

BSNT_05756___    683 GAGCCAGAAAGCTAGTTTTATTTGAAGAAGATGAACATGCCTCTCCGTCC    732
                     ||||||||||.|||||||||||||||||.||.||||||||||||||||||
RBAM_034730__    680 GAGCCAGAAAACTAGTTTTATTTGAAGACGACGAACATGCCTCTCCGTCC    729

BSNT_05756___    733 TTCAAAATGGACCGGAACGGCAATTTAGAAAAATTAGCGGAATGA    777
                     ||.||||||||||||||||||||||||||||||.|.||.||||.|
RBAM_034730__    730 TTTAAAATGGACCGGAACGGCAATTTAGAAAAAATGGCCGAATAA    774


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