Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05737 and RBAM_034640
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:14
# Commandline: needle
# -asequence dna-align/BSNT_05737.1.9828.seq
# -bsequence dna-align/RBAM_034640.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05737-RBAM_034640.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05737-RBAM_034640.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05737
# 2: RBAM_034640
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 491
# Identity: 286/491 (58.2%)
# Similarity: 286/491 (58.2%)
# Gaps: 115/491 (23.4%)
# Score: 699.0
#
#
#=======================================
BSNT_05737 1 ATGTAC---------GAAACCATTCGAGTCGGCGATTGGTTGATAAAAGC 41
||||.| |||| ||| |||.| |||.|.||..||||
RBAM_034640 1 ATGTTCACCGTCTTTGAAA----TCG----GGCCA-TGGGTCATTGAAGC 41
BSNT_05737 42 CGACGTGGAAGAAACGAGAAAGCAATATGAGAAAGAT-ATAG-AGGATAT 89
.||.|.|||.|||||||||||.|||||| ||||.|| ||.| ..|||..
RBAM_034640 42 AGATGCGGAGGAAACGAGAAAACAATAT--GAAAAATCATGGCCTGATCC 89
BSNT_05737 90 GTGTGAATGCGGTAACTGTCTTAACTATTACGAGGCAGTGAATGAACTGC 139
.||.||.|||||.|.|||.|..||||.||.||||||.||||||...||.|
RBAM_034640 90 CTGCGATTGCGGGAGCTGCCGGAACTTTTCCGAGGCGGTGAATCTCCTTC 139
BSNT_05737 140 CAGTCCAAAAAGCACAAGTA----TTAGAAAGTTTCGGCCTCATTCCGTC 185
|.|.|.|.||| ||||| | |||...|||||.|| ||| ||||
RBAM_034640 140 CCGCCGAGAAA--ACAAG-ATTGTTTACGCAGTTTGGG----ATT-CGTC 181
BSNT_05737 186 CAAATG-----CACAGATATAAATT-----ATCATGG---GGTAAAAGAT 222
|...|| ||| ||| || |.||||| ||.|||.|
RBAM_034640 182 CGGCTGTCTGTCAC-GAT-----TTGGGGGAGCATGGAAAGGAAAACG-- 223
BSNT_05737 223 CATCTGCACTTTTATATAGCG---AGTTATTTTATAGTAGGCCGTATTGT 269
..|||||...|||| ||| ||.|||...||.||.|||.|..||..
RBAM_034640 224 -GCCTGCATCATTAT---GCGGGCAGCTATCCGATTGTCGGCAGGCTTAG 269
BSNT_05737 270 TGAAGGAAAACAAGAATGGAATCCGAAAAAGATTGATTTC---TCG---T 313
.||||| .||| ||||| .|||| ||| .
RBAM_034640 270 GGAAGG---------CTGG---CCGAA--------TTTTCATATCGAGAG 299
BSNT_05737 314 GGC-----ATA------TTTCATTTTCAGTGCCG----CAACACCAAATT 348
||| ||| ||||.||||||.||||| |||| |.||
RBAM_034640 300 GGCGGGAGATATCCGCTTTTCGTTTTCATTGCCGAGTACAAC----ATTT 345
BSNT_05737 349 TACATTCCTAAGGGTTTTCCAAAACCAATTATTCAGCTCGATTGTGTTAC 398
|..||.||.|||||||||||..|.||.|||||.||.|||||.| |.|.||
RBAM_034640 346 TTTATACCGAAGGGTTTTCCTGACCCTATTATCCATCTCGACT-TTTCAC 394
BSNT_05737 399 GCTT-CTTCCATGGGTCATTGACCAACCATAC---GAATAA 435
.||| ||.||||||||..||||..| |.|| ||.|||
RBAM_034640 395 TCTTGCTCCCATGGGTGCTTGAGGA---AGACGCGGATTAA 432
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