Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05736 and RBAM_034630
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:14
# Commandline: needle
# -asequence dna-align/BSNT_05736___ywhE.1.9828.seq
# -bsequence dna-align/RBAM_034630___ywhE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05736___ywhE-RBAM_034630___ywhE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05736___ywhE-RBAM_034630___ywhE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05736___ywhE
# 2: RBAM_034630___ywhE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2145
# Identity: 1585/2145 (73.9%)
# Similarity: 1585/2145 (73.9%)
# Gaps: 141/2145 ( 6.6%)
# Score: 5817.5
#
#
#=======================================
BSNT_05736___ 1 GTGGATGCAATGACAAA--------TAAACGGCTGAGACTGACGCTGAAA 42
|||||| ||| .||||.|||.|||.|.|||.|.|||
RBAM_034630__ 1 GTGGAT--------AAAGTATCTGGAAAACAGCTCAGAGTCACGTTCAAA 42
BSNT_05736___ 43 ACCGTTCGCGCCTTTATCTTTTTAGGGGCTTTTGCGGC------CTTGGC 86
|.|.|.||.||||..||||||.| |...||..| |||| ||.|.|
RBAM_034630__ 43 ATCATCCGTGCCTGCATCTTTCT-GACACTGAT-CGGCGGAATGCTGGCC 90
BSNT_05736___ 87 GGCAGCTG--------CCGTGTTTATGACTGTCATTTTGATAGCCAAATA 128
|||..||| |||| ||.|.||| .|||.||||.
RBAM_034630__ 91 GGCGTCTGCTTCACATCCGT-----------TCTTCTTG-CAGCGAAATG 128
BSNT_05736___ 129 CCAGGGCGCTCCCTCGGTGCAAGTGCCGCAATCCACGATTTTGTATGCGA 178
.|||||.||.|||||.||.|..||.||.||.||.||||||.|.|||||.|
RBAM_034630__ 129 GCAGGGGGCCCCCTCCGTCCGGGTTCCTCAGTCTACGATTCTTTATGCAA 178
BSNT_05736___ 179 GTGACGGCTCAAAGCTCGGGGAAACGAACTACGGCGAAAAGCGCTATTGG 228
.|||||||||||||||.||.||.||..|.|.|||.|||||||||||.|||
RBAM_034630__ 179 ATGACGGCTCAAAGCTAGGTGAGACCGATTTCGGGGAAAAGCGCTACTGG 228
BSNT_05736___ 229 GTCCCCTTAAAGGACATGAATCCGACGATCGTAAAAGCGACAGTG----- 273
||.|..|||||.||.||.|||||| |.|||| |||
RBAM_034630__ 229 GTGCGGTTAAAAGATATCAATCCG---------ATAGCG---GTGCAGGC 266
BSNT_05736___ 274 -GCGATT------GAAGACCAGAATTTCTACGATCATCACGGCTTTGATT 316
|||||| ||.||.||.||.||.|||.||||.|||||.|||||||
RBAM_034630__ 267 CGCGATTGCGGTGGAGGATCAAAACTTTTACAATCACCACGGTTTTGATT 316
BSNT_05736___ 317 ATAAACGCATGGCCGGCGCGGCGCTTGCTGACCTGAAAGCATTTGCCAAG 366
|....||.|||||||.|||.|||||.||||||.|.||.|||.|.||||||
RBAM_034630__ 317 ACCGGCGGATGGCCGCCGCCGCGCTGGCTGACATAAAGGCAATGGCCAAG 366
BSNT_05736___ 367 GTTCAGGGTGCAAGCACCATCACCCAGCAATATGCCAGAAATTTATACCT 416
||||||||.|||||||||||||||||||||||.||.||||||.|.|||||
RBAM_034630__ 367 GTTCAGGGCGCAAGCACCATCACCCAGCAATACGCGAGAAATCTCTACCT 416
BSNT_05736___ 417 TGAACACGACAAAACGTGGAAACGGAAATGGAATGAGGCGTTCTACACGA 466
|||.||.||.||.||.||||||||.|||||||||||.||.||.|||||||
RBAM_034630__ 417 TGAGCATGATAAGACATGGAAACGTAAATGGAATGAAGCCTTTTACACGA 466
BSNT_05736___ 467 TCCGTCTGGAACAAAACTATTCTAAGGACGAGATATTAGAAGGCTATTTA 516
||||.||.|||||.|||||||||||..|||||||.||||||||.|||.||
RBAM_034630__ 467 TCCGCCTTGAACAGAACTATTCTAAAAACGAGATTTTAGAAGGTTATGTA 516
BSNT_05736___ 517 AATACGATTTACTACGGACACGGCGCCTACGGCATTGAAGCAGCTTCCCG 566
||||||||.||.|||||.||||||||.||.||.||||||||.||.||.||
RBAM_034630__ 517 AATACGATATATTACGGCCACGGCGCATATGGAATTGAAGCTGCCTCGCG 566
BSNT_05736___ 567 CCTTTATTTCGGCAAGCATGCCAAAAACCTGACGGATGCGGAGGCGGCGC 616
|||.|||||||||||.||.||||||.|.||||..||||||||.||.|.||
RBAM_034630__ 567 CCTGTATTTCGGCAAACACGCCAAAGATCTGAACGATGCGGAAGCCGTGC 616
BSNT_05736___ 617 TTTTGGCAGGAATCCCGAAAGGCCCTTCCGGCTATTCACCGTATGTCAAT 666
|||||||.||.||.|||||||||||.|||||||||||.||.|||||||..
RBAM_034630__ 617 TTTTGGCGGGCATACCGAAAGGCCCGTCCGGCTATTCGCCATATGTCAGC 666
BSNT_05736___ 667 GAGACGAAAGCCAAGGAGCGCCAGAAAACGATTGTGCGGATGATGGAAAA 716
||.|.|||.|||||..||||||||.||||.|||.|.||.|||||| |..
RBAM_034630__ 667 GAAAAGAAGGCCAAACAGCGCCAGGAAACCATTCTCCGAATGATG--ATC 714
BSNT_05736___ 717 G--CAACAGATGATCAGCCAAAAGAAA--GCGGATGAATTGATCAAGGAA 762
| |||.|.|||||| .||||||||| ||| |||..|.|.|||.||
RBAM_034630__ 715 GGCCAAAAAATGATC--TCAAAAGAAAAGGCG---GAAAGGCTTAAGAAA 759
BSNT_05736___ 763 ---CCTCTTTCCTATCAGCCTTTGAATAAACAAGTTTCCAA-------GA 802
||.|||.||||||||||..|||| ||||| .|| ||
RBAM_034630__ 760 ACGCCGCTTGCCTATCAGCCGCTGAA-AAACA------GAACCGCGGCGA 802
BSNT_05736___ 803 GAAAGGCTCCTTATTTCTACGACAATGCGATGAGAGAGCTGGAGAAAAAG 852
.||.|||.||||||||.|||||..|||||||||.|||..|.|||||||||
RBAM_034630__ 803 AAACGGCGCCTTATTTTTACGATGATGCGATGAAAGAAATCGAGAAAAAG 852
BSNT_05736___ 853 CTCGGCATGACACGGGAGCAAATTGAAACGAGCGGGTTAAACGTCTATAC 902
|||||||||||.||.||.||..|.|.|||||||||.||....||.|||||
RBAM_034630__ 853 CTCGGCATGACGCGCGAACAGCTCGCAACGAGCGGATTGCGTGTTTATAC 902
BSNT_05736___ 903 AACGGTAGATAAACGGATGCAGCGCATCGCCGAGGAGACCATT-----AC 947
||||.|.|||||.||.||||||||.||.|| |||.|.||.| ||
RBAM_034630__ 903 AACGCTTGATAAGCGCATGCAGCGGATTGC---GGAAAACACTGTGGCAC 949
BSNT_05736___ 948 CGAAACGGT---TAACGCGGGCTCTGACATTCAAGTCGGGTTTTCAGCCA 994
|.|||.| || |.||||||||||||||.|||||.|||||.||.|
RBAM_034630__ 950 --ATACGATCCGTA---CCGGCTCTGACATTCAGGTCGGCTTTTCCGCGA 994
BSNT_05736___ 995 TTGATCCCCGC-ACCGGAAACGTTCTCGCCCTTGTCGGCGGCAGGGATTA 1043
||||| ||.|| ||.||...|||.||.||.|||.|||||||..|.||.||
RBAM_034630__ 995 TTGAT-CCGGCAACAGGGCGCGTGCTTGCGCTTCTCGGCGGACGTGACTA 1043
BSNT_05736___ 1044 TCAAAAAAGCCCGTTTGACCGGACGACACAGGCGAAGCGCCAGCCTGCTT 1093
..||||||||||||||||||||.|||||||||||||.||.|||||.||||
RBAM_034630__ 1044 CGAAAAAAGCCCGTTTGACCGGGCGACACAGGCGAAACGGCAGCCCGCTT 1093
BSNT_05736___ 1094 CGACGATCAAGCCATTGCTGTACTATAAAGCGATTCAGAGTGGATTTACG 1143
|.|||||||||||..|..|||||||.|||||||||||.||.||.|||||.
RBAM_034630__ 1094 CCACGATCAAGCCGCTTTTGTACTACAAAGCGATTCAAAGCGGCTTTACA 1143
BSNT_05736___ 1144 CCAGTCACTTTGATGAAAAGCGAAGAAACCGAGTTTCAAATTGATGCAAA 1193
||.|||||..|||||||||||||||..||.|||||.||.|||||.|..||
RBAM_034630__ 1144 CCGGTCACGCTGATGAAAAGCGAAGCCACAGAGTTCCAGATTGACGACAA 1193
BSNT_05736___ 1194 GGGAGAAACCTATTCTCCAAGCAACTATAACGGATACTACGCCAACAAGC 1243
.|||||.||.||||||||||||||.||.|||||.|||||||||||.||.|
RBAM_034630__ 1194 CGGAGATACTTATTCTCCAAGCAATTACAACGGCTACTACGCCAATAAAC 1243
BSNT_05736___ 1244 CGATTACGCTTCTGCAGGCGCTGGCGCTTTCCGACAATATTTACGCTGTG 1293
||||||||||.||.||||||||.|||.|.||.|||||.|||||.||.|||
RBAM_034630__ 1244 CGATTACGCTGCTTCAGGCGCTTGCGTTATCAGACAACATTTATGCCGTG 1293
BSNT_05736___ 1294 AAAACGCATCTTTTTCTCGGCACGAACAAACTTGTAAAGACGGCAAAGGA 1343
||.||.|||||.||||||||||.|||.||.||.||...|.||||||||||
RBAM_034630__ 1294 AAGACCCATCTCTTTCTCGGCATGAATAAGCTCGTGTCGGCGGCAAAGGA 1343
BSNT_05736___ 1344 ATTCGGCATTACCGCCCATCTTCAAG-CACTGCCGTCCCTGGCACTCGGC 1392
|||||||||.|.||..||| ||.||| |.||.|||||.|||||.|||||.
RBAM_034630__ 1344 ATTCGGCATCAGCGAACAT-TTAAAGCCTCTTCCGTCTCTGGCGCTCGGA 1392
BSNT_05736___ 1393 ACCGAACCCGTGCGTCCGATTGAGATGGTCAACGCCTATGCCATGCTCGC 1442
||.|||||||||||.||||||||||||||.||.|||||.||.||||||||
RBAM_034630__ 1393 ACTGAACCCGTGCGCCCGATTGAGATGGTTAATGCCTACGCGATGCTCGC 1442
BSNT_05736___ 1443 AAATGGCGGAAAGAAAATCGAACCGACTTTTATTTCAAGGGTAACGGACG 1492
|||.||.|||||..|||||...||..|.|||||..|||..||.|||||..
RBAM_034630__ 1443 AAACGGGGGAAAACAAATCACCCCTTCCTTTATCACAAAAGTGACGGATA 1492
BSNT_05736___ 1493 CAGCCGGCCACGTGCTGTACGAAAACCCG------AATCAGCATAAACAG 1536
|.||||||.||.|..||||.|||.|.||| .||||| |||
RBAM_034630__ 1493 CCGCCGGCAACATCTTGTATGAACAGCCGCGCGGACATCAG------CAG 1536
BSNT_05736___ 1537 GTGCTTGATGAAAAAGCCGCTTTTGTCACAGCGAGTATGATGACAGGCAT 1586
..|||||||.||||||||||||||||.||.|||||.||||||||.|||||
RBAM_034630__ 1537 ACGCTTGATAAAAAAGCCGCTTTTGTGACGGCGAGCATGATGACGGGCAT 1586
BSNT_05736___ 1587 GTTTGATACCGATTTAAATGGATATACGTCGGTTACGGGACGAACGATAG 1636
|||||||...||||||||.||.|||||.||.||.||||||||.||.||..
RBAM_034630__ 1587 GTTTGATCAGGATTTAAACGGCTATACTTCCGTCACGGGACGCACCATTT 1636
BSNT_05736___ 1637 CCAACCGCCTGACAAGAACGTATGCCGGAAAATCAGGAACCACCAGCGCA 1686
|..||||.|||||..||||.||||.|||.||||||||.||.||.||||||
RBAM_034630__ 1637 CTGACCGGCTGACCCGAACCTATGGCGGTAAATCAGGCACGACGAGCGCA 1686
BSNT_05736___ 1687 GACAGCTGGATGATCGGCTTCAATCCGAAACTGGCCGCAGGTGTTTGGAC 1736
||||||||||||||||||||.||.|||...||.|||||.|||||.|||||
RBAM_034630__ 1687 GACAGCTGGATGATCGGCTTTAACCCGGCTCTTGCCGCCGGTGTATGGAC 1736
BSNT_05736___ 1737 CGGCTATGACAAAAACAGCACCATCGACTCGGTCGAAGAAAAAAGCTATG 1786
.|||||||||||||.||||||.||.||.||.||.||.|||||||||||||
RBAM_034630__ 1737 AGGCTATGACAAAAGCAGCACGATTGATTCAGTAGAGGAAAAAAGCTATG 1786
BSNT_05736___ 1787 CTAAAACCATTTGGGCGGACTTCATGGAGAACGCGCTCAAGGGCGATCCG 1836
|.||.||.||||||||||||||.||||||||.||||||.|.||.||.|||
RBAM_034630__ 1787 CGAAGACGATTTGGGCGGACTTTATGGAGAAGGCGCTCGAAGGAGAACCG 1836
BSNT_05736___ 1837 GAAACCGCGTTCAAGCCGCCAAAAGGCGTAACCGGTGTGTACATTGATCC 1886
||||..|||.|.||.|||||.||.|||||.||.||.||.||.||.|||||
RBAM_034630__ 1837 GAAATAGCGCTTAAACCGCCGAAGGGCGTCACGGGCGTCTATATCGATCC 1886
BSNT_05736___ 1887 GGAAACAGGCTACTCATCAGGTCCCGGCTGTGCCGCTAAGCATTACACAT 1936
.|...|.||||||.|.||.||.||||||||.|||||.||||||||.||.|
RBAM_034630__ 1887 CGCTTCCGGCTACACTTCGGGACCCGGCTGCGCCGCAAAGCATTATACGT 1936
BSNT_05736___ 1937 ATTTTGTGAAAGGGACAGAACCCGCAAACGTGTGCTACGGGGCAGAACCC 1986
||||..|...|||.||.||.|||||..|.|||||||||||..|.|||||.
RBAM_034630__ 1937 ATTTCATCGCAGGCACTGAGCCCGCGGATGTGTGCTACGGACCGGAACCT 1986
BSNT_05736___ 1987 GCAAAACAAACAAAAG--ACCGGCTTCCATC--CAAAGAAAAGCCTGCTT 2032
.|.||| |||.||||| ||..||..||..| ||||||| || |
RBAM_034630__ 1987 TCTAAA-AAAGAAAAGGAACACGCCCCCGCCCGCAAAGAA------GC-T 2028
BSNT_05736___ 2033 CCGAG-AAAAAGTGGTGGGACAAATGGCTGGGGCGACATCATTGA 2076
|||.| ||||||||||||||.||.|||||.||...|.|..|.|||
RBAM_034630__ 2029 CCGCGCAAAAAGTGGTGGGATAAGTGGCTCGGCAAAAAAGACTGA 2073
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