Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05729 and RBAM_034530
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:14
# Commandline: needle
# -asequence dna-align/BSNT_05729___rapF.1.9828.seq
# -bsequence dna-align/RBAM_034530___rapF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05729___rapF-RBAM_034530___rapF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05729___rapF-RBAM_034530___rapF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05729___rapF
# 2: RBAM_034530___rapF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1188
# Identity: 878/1188 (73.9%)
# Similarity: 878/1188 (73.9%)
# Gaps: 84/1188 ( 7.1%)
# Score: 3140.0
#
#
#=======================================
BSNT_05729___ 1 GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATG 50
|||.|..||||..||||.|||||..|..|.||||||||.||.||||||||
RBAM_034530__ 1 GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATG 50
BSNT_05729___ 51 GTATATGTACATACGCCGATTCAGCATACCCGATGCAGAATATTTGCGAC 100
||||||||||||.||..|.||||||||.||.||.||.||.||.|||||..
RBAM_034530__ 51 GTATATGTACATTCGAAGGTTCAGCATCCCGGACGCCGAGTACTTGCGGA 100
BSNT_05729___ 101 GAGAAATCAAGCAAGA----GCTGGATCAAATGGAAGAAGATCAAGACCT 146
||||||||||..|||| ||.|| || |||||||.|||||.||.||
RBAM_034530__ 101 GAGAAATCAAAGAAGAACTTGCAGG-TC---TGGAAGATGATCAGGATCT 146
BSNT_05729___ 147 TCATTTGTACTATTCACTGATGGAGTTTCGGCACAACCTAATGCTTGAGT 196
||||.|.||||||||.||.|||||.||.||.|||||.||.|||||.||.|
RBAM_034530__ 147 TCATCTATACTATTCTCTCATGGAATTCCGCCACAATCTGATGCTCGAAT 196
BSNT_05729___ 197 ACCTTGAACCGTTAGAAAAAAT----GAGGATTGAGGAACAGCCGAGACT 242
||||.||||||.|.| ||| |.||||.||.||||||||.|||||
RBAM_034530__ 197 ACCTCGAACCGCTGG----AATCGCAGCGGATAGAAGAACAGCCTAGACT 242
BSNT_05729___ 243 GTCTGATCTGCT-GCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGT 291
.||.|||||||| || .||.|||||||||||.|||||.|...|.||.||.
RBAM_034530__ 243 ATCGGATCTGCTCGC-GGATATTGATAAAAAGCAGGCCCTGCTGACCGGA 291
BSNT_05729___ 292 CTGCTTGAGTACTATTTTAACTTCTTCAGAGGCATGTACGAGCTGGACCA 341
|..|||||.||.||||||||.||.|||.|.||.|||||.||||||||...
RBAM_034530__ 292 CGTCTTGATTATTATTTTAATTTTTTCCGGGGGATGTATGAGCTGGAATG 341
BSNT_05729___ 342 GCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGC 391
.||.||||||||.||.||.|||.|.|||||.||.||.||.|||...||||
RBAM_034530__ 342 CCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGC 391
BSNT_05729___ 392 -TGATATTCGTTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGAT 440
|||| ||.||.||.|||.|.||.|||||||||||.||||..||||||||
RBAM_034530__ 392 TTGAT-TTTGTCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGAT 440
BSNT_05729___ 441 GTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCAATGGACTATG 490
|||.||.||.||.||.|||||||||||.||.||||||||.|||||.||||
RBAM_034530__ 441 GTCAGAGTCCTACTATTATATGAAACAGACTTATTTTTCTATGGATTATG 490
BSNT_05729___ 491 CACGGCAAGCATATGAAATATA-CA-AAGAACATGAAGCTTATAATATAA 538
|.|||||.||.|||.||||.|| || ||| ||.||.||.||||||||||
RBAM_034530__ 491 CCCGGCAGGCTTATAAAATTTATCATAAG--CAGGAGGCATATAATATAA 538
BSNT_05729___ 539 GATTGCTGCAGTGTCATTCTTTATTTGCCACCAATTTTTTAGATTTAAAA 588
|..||||.|||||.|||||.||.||.||.|||||.|||.|.||.|||||.
RBAM_034530__ 539 GGGTGCTTCAGTGCCATTCATTGTTCGCTACCAACTTTCTTGACTTAAAG 588
BSNT_05729___ 589 CAGTATGAGGATGCCATCTCA-CATTTTCAAAAAGCTTATTCTATGGCAG 637
||.|||||.||.||.|| ||| ||||||.||||.||||||.|.|||||||
RBAM_034530__ 589 CAATATGATGAAGCAAT-TCAGCATTTTAAAAAGGCTTATGCCATGGCAG 637
BSNT_05729___ 638 AAGCTGAAAAGCAGCCCCAATTAATGGGGAGAACTTTGTACAATATCGGG 687
|.||.|||.|||||||.|||||||||||..|.|||.|.||.||||||||.
RBAM_034530__ 638 AGGCAGAACAGCAGCCACAATTAATGGGCCGGACTCTATATAATATCGGA 687
BSNT_05729___ 688 CTTTGTAAAAACAGCCAA--------------AGCCAATATGAGGATGCC 723
||||||...||||||||| |||||.| |||..|
RBAM_034530__ 688 CTTTGTTTTAACAGCCAAGAAAATTACAAACCAGCCATT-----GATTAC 732
BSNT_05729___ 724 ATACCTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGA----ATCAAATA 769
||| |||.|.|||||||||||||||||||| |.||
RBAM_034530__ 733 ATA---------AAACGGGCAATAGCTGTTTTTGAAGATGGGAACA---- 769
BSNT_05729___ 770 TTCTTC-CTTCCTTACCTCAAGCGTATTTTTTAATTACACAGATCCATTA 818
||.|| ||||..|.||.|||||.|||||.|||||.|||||.||.|||||
RBAM_034530__ 770 -TCATCACTTCTCTCCCGCAAGCCTATTTCTTAATCACACAAATACATTA 818
BSNT_05729___ 819 TAAATTAGGAAAAATGGATAAAGCTCATG--AATATCATAGTAA--GGGA 864
||||.|.|||||.||||..|.||| || | ||||||||...|| |||.
RBAM_034530__ 819 TAAAATCGGAAATATGGCCATAGC-CA-GACAATATCATGACAAAGGGGT 866
BSNT_05729___ 865 ATGGCTTATTCACAAAAGGCCGGAGATGTAATATATTTATCAGAGTTTGA 914
|| |||||.||.|..||||.|.||||....|||||.|..|.||||.|||
RBAM_034530__ 867 AT--CTTATGCAGAGGAGGCAGAAGATTCCCTATATATCGCCGAGTATGA 914
BSNT_05729___ 915 ATTTTTGAAATCTTTATACTTATC----AGGCCCGGATGAAGAAGCAATT 960
||||||..|||||||||| |.|| || ||.||||||||||||| |
RBAM_034530__ 915 ATTTTTAGAATCTTTATA--TGTCGGTGAG--CCTGATGAAGAAGCAA-T 959
BSNT_05729___ 961 CAAGG-ATTTTTTGATTTTCTCGAAAG-TAAAATGTTGTATGCTGATCTT 1008
||.|| ||.||||||.|||||| |.|| ||||..|.||||||||||||||
RBAM_034530__ 960 CATGGAATGTTTTGACTTTCTC-AGAGATAAATCGATGTATGCTGATCTT 1008
BSNT_05729___ 1009 GAAGATTTCGCTATTGATGTGGCAAAATATTATCATGAACGTAAAAATTT 1058
||||||||.||..|.||||||||||||||||||||||||.|..|||||||
RBAM_034530__ 1009 GAAGATTTTGCCTTAGATGTGGCAAAATATTATCATGAAAGAGAAAATTT 1058
BSNT_05729___ 1059 TCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTA 1108
..|.||.|||||.||.||||||||.|||||||||.||..|||.||.|..|
RBAM_034530__ 1059 CGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGA 1108
BSNT_05729___ 1109 TTCAAGGAGGAGTGAGTTTGTATGAAATTGAAGTCTAA 1146
||||||||||.||||..|||||||||||||||||.|||
RBAM_034530__ 1109 TTCAAGGAGGTGTGAAGTTGTATGAAATTGAAGTATAA 1146
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