Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05724 and RBAM_034500
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:13
# Commandline: needle
# -asequence dna-align/BSNT_05724___albG.1.9828.seq
# -bsequence dna-align/RBAM_034500___albG.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05724___albG-RBAM_034500___albG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05724___albG-RBAM_034500___albG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05724___albG
# 2: RBAM_034500___albG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 766
# Identity: 419/766 (54.7%)
# Similarity: 419/766 (54.7%)
# Gaps: 281/766 (36.7%)
# Score: 1809.0
#
#
#=======================================
BSNT_05724___ 1 ATGAAAAAAAACACTGTCTTTACCCTTTTATTGCTGCTTATAGGTATGGC 50
RBAM_034500__ 0 -------------------------------------------------- 0
BSNT_05724___ 51 GGCTTATTCCTTCGGCTGGGTTCAGGCCGTGGCCGAAGCCGCCGCCCAAT 100
RBAM_034500__ 0 -------------------------------------------------- 0
BSNT_05724___ 101 ATGTACAGATGATCAACAATGACGCTGTGCGGCTCGGGCTGCTGGCTTGT 150
RBAM_034500__ 0 -------------------------------------------------- 0
BSNT_05724___ 151 ACTGCTGCCCTCCTGATGCTGCCTGCTTTTCTCTATCTTCATTATGTCAC 200
RBAM_034500__ 0 -------------------------------------------------- 0
BSNT_05724___ 201 CCAATCCGTGAAAAACATGACAGCAGCTTTTCAGAAACTCACACAGTCTC 250
||||||||||||||||||||||||||||||||||
RBAM_034500__ 1 ----------------ATGACAGCAGCTTTTCAGAAACTCACACAGTCTC 34
BSNT_05724___ 251 ATCAAAGCTGCTGTGACTTTCAGCAACACAACTTGTGCAGCCGATATGCA 300
|||.|||||||||.|||||.|.||||||.|..|||||||||.||.||||.
RBAM_034500__ 35 ATCGAAGCTGCTGCGACTTCCGGCAACATAGATTGTGCAGCAGAAATGCC 84
BSNT_05724___ 301 GAAGACGTCAAATCGCTGCGTGACAGCTATAAAAACGTCCGCCAAACATA 350
.|.||.||||||.|||||||||||||||||||||||||||||||||||..
RBAM_034500__ 85 AACGATGTCAAAGCGCTGCGTGACAGCTATAAAAACGTCCGCCAAACACC 134
BSNT_05724___ 351 CGTGATGGCTGCCGTGTTGTGCCAAGTCATCATATTCGGCTGCATGTTCG 400
||||||||||||.||.||.||||||||||||||||||||||||.||||||
RBAM_034500__ 135 CGTGATGGCTGCTGTATTATGCCAAGTCATCATATTCGGCTGCGTGTTCG 184
BSNT_05724___ 401 AAATCGTTAAAGCCGTCCCTTTCCGCCTTCATACGCCCCCTGCCCTTTCA 450
|||||||.||||||||||||||||||.||||.|||||||.||||.|.|||
RBAM_034500__ 185 AAATCGTCAAAGCCGTCCCTTTCCGCTTTCACACGCCCCTTGCCGTATCA 234
BSNT_05724___ 451 ATGGGACTTGCGATGCTACTGATCCTGTATTTATTGTTTTGCATGCGAAC 500
||||||||.|||.||.|||||||..||||||||||||.||..|||||.||
RBAM_034500__ 235 ATGGGACTCGCGGTGTTACTGATTTTGTATTTATTGTATTTTATGCGGAC 284
BSNT_05724___ 501 GTATTTGCGGCAGCTTTTCCGGCACGGCAGCCTGTTCAGAAAAGTGTTTG 550
|||.||||.|||||||||||..||.|.|||||||||||.|||||.|..||
RBAM_034500__ 285 GTACTTGCTGCAGCTTTTCCAACATGTCAGCCTGTTCAAAAAAGGGCATG 334
BSNT_05724___ 551 CGGGAGTGCTGGCAGCAGCCGGGATTTGGTGGATGCTCAGTTTCTCTATA 600
||||||.||||.|||.|||||||.|||||.||||||||||||||.|.|||
RBAM_034500__ 335 CGGGAGCGCTGACAGGAGCCGGGGTTTGGCGGATGCTCAGTTTCACCATA 384
BSNT_05724___ 601 AGTGAACTGCTGTTTCTGATTATCCTGGCTGCCATTCAGCAAATCGGATC 650
|||||||||||||||.|.||.||||||||||||||.|||||.|||||.||
RBAM_034500__ 385 AGTGAACTGCTGTTTTTAATCATCCTGGCTGCCATCCAGCAGATCGGCTC 434
BSNT_05724___ 651 ATTTATTTATAAGCGATTCTCTTATCGCAGCACCGCTTCTCTTGATCT-- 698
|||||||| |||.|||||.|.||||||||||.|.||||||||..|.||
RBAM_034500__ 435 ATTTATTT-TAAACGATTTTTTTATCGCAGCTCTGCTTCTCTCAACCTGT 483
BSNT_05724___ 699 ---ATAA------------------------------------------- 702
||||
RBAM_034500__ 484 GAAATAAGCTACATCGCAATCGCTGACGGACCAGTCCCAACCGGAATCAC 533
BSNT_05724___ 702 ---------------- 702
RBAM_034500__ 534 CGTCATGGCTGTATAA 549
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