Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05688 and RBAM_034370
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:11
# Commandline: needle
# -asequence dna-align/BSNT_05688.1.9828.seq
# -bsequence dna-align/RBAM_034370___ywjA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05688-RBAM_034370___ywjA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05688-RBAM_034370___ywjA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05688
# 2: RBAM_034370___ywjA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1745
# Identity: 1147/1745 (65.7%)
# Similarity: 1147/1745 (65.7%)
# Gaps: 274/1745 (15.7%)
# Score: 4270.0
#
#
#=======================================
BSNT_05688 0 -------------------------------------------------- 0
RBAM_034370__ 1 GTGCTGCGACAATTTTTTTCTTATTATAAACCGTACAAAAAGCTGTTTTT 50
BSNT_05688 0 -------------------------------------------------- 0
RBAM_034370__ 51 TCTCGACTTCTTTTCTGCCATCGCCGGCGGATTGATGGAGCTGAGTTTTC 100
BSNT_05688 0 -------------------------------------------------- 0
RBAM_034370__ 101 CTCTGATTGTCAATTACTTTATCGATACATTGCTTCCGGGGCAGGATTGG 150
BSNT_05688 0 -------------------------------------------------- 0
RBAM_034370__ 151 AGTCTGATTATTTTGACTTCCGCGGCTTTATTCGGGGTGTACGCCCTCAG 200
BSNT_05688 1 -------------------------------------ATGCTTGGTATCA 13
|||||.||.||.|
RBAM_034370__ 201 CTCGGCACTTCAGTATGTTGTGACGTATTGGGGCCATATGCTCGGCATTA 250
BSNT_05688 14 ATATTGAGACTGATATGAGAAAGTCGCTTTTTGACCATTTGCAAAAGCTC 63
|.|||||.||.||||||.|.||...||||||.||||||.||||||||||.
RBAM_034370__ 251 ACATTGAAACCGATATGCGGAAAAAGCTTTTCGACCATCTGCAAAAGCTT 300
BSNT_05688 64 TCGTTCAAATTTTACGACAACAACAAGACGGGAACGCTGATGTCGAAGCT 113
|||||||||||||||||.||||||||.|||||.|...|.|||||.|||||
RBAM_034370__ 301 TCGTTCAAATTTTACGATAACAACAAAACGGGCAGTTTAATGTCCAAGCT 350
BSNT_05688 114 CACGAACGATTTAATGTATATCGGTGAAGTCGCCCATCACGGTCCGGAAG 163
|||.||.|||||.|||||||||||.|||..||||||.|||||.||.||||
RBAM_034370__ 351 CACCAATGATTTGATGTATATCGGAGAAACCGCCCACCACGGGCCTGAAG 400
BSNT_05688 164 ACTTATTCATTGCGGTCATGACCATTCTAGGGGCGTTCGGAGTGATGCTG 213
||.|.||.||.|||.|||||||.|||.|.||.||||||||.|||||||||
RBAM_034370__ 401 ACCTGTTTATCGCGATCATGACGATTTTGGGCGCGTTCGGTGTGATGCTG 450
BSNT_05688 214 TTTATTAACTGGCAGCTTGCTTTATTAACGTTTATCATTATGCCGATCGT 263
||||||||||||||||||||..|.||.||.|||||||||||||||.||||
RBAM_034370__ 451 TTTATTAACTGGCAGCTTGCGCTGTTGACTTTTATCATTATGCCGGTCGT 500
BSNT_05688 264 CATTTGGCTAGCGCTTTATTTCAACAAAAAAATGACCAAAGCATTTACCA 313
|||.|||||.||..|.||.|||||.||||||||||||...||.|||||.|
RBAM_034370__ 501 CATATGGCTTGCTTTGTACTTCAATAAAAAAATGACCTCTGCGTTTACAA 550
BSNT_05688 314 CGCTGAACAAGGATATCGGAGACTTCAGCGCGCGTGTAGAAAATAACATC 363
..||||||||.||..|||||||||||||||||.|.||.|||||.||.|||
RBAM_034370__ 551 AACTGAACAAAGACGTCGGAGACTTCAGCGCGAGGGTTGAAAACAATATC 600
BSNT_05688 364 GGCGGCATCCGGCTTGTGCAGGCGTTCGGAAATGAAGCATTTGAAAAAGA 413
|||||||||||.|||||.|||||.|||.|.||||||||.|||||||...|
RBAM_034370__ 601 GGCGGCATCCGTCTTGTTCAGGCTTTCAGCAATGAAGCGTTTGAAACGCA 650
BSNT_05688 414 ACGCTTCGCCGTCAACAACCAGCGTTTCCGTGCAACAAAGCTTTCTTCCT 463
.||.||.|.|||.|||||.|||||||||||...|||||||||..|.||.|
RBAM_034370__ 651 GCGGTTTGACGTGAACAATCAGCGTTTCCGCAAAACAAAGCTGACGTCTT 700
BSNT_05688 464 ACAAAATCATGGCGAAAAACGGGTCAATCAGCTATATGCTGACACGGTTT 513
|.||||||||||||||||||||.||.|||||.||.|||||||||.|.||.
RBAM_034370__ 701 ATAAAATCATGGCGAAAAACGGCTCGATCAGTTACATGCTGACAAGATTC 750
BSNT_05688 514 GTCACGCTGTTTGTTCTT-TTGTGCGGGACGTGGTTTGTCATTCGCGGCT 562
|||||||||||.| |||| ||||||||.||.|||||.||.||.|||||.|
RBAM_034370__ 751 GTCACGCTGTTCG-TCTTATTGTGCGGCACATGGTTCGTGATCCGCGGAT 799
BSNT_05688 563 CCTTATCGTACGGGGAATTTGTGGCGTTTGTGCTCCTGACGAATGTGCTG 612
|.|||||.|||||||||||.||.||.||||||||.||||||||.||.|||
RBAM_034370__ 800 CGTTATCTTACGGGGAATTCGTCGCTTTTGTGCTGCTGACGAACGTTCTG 849
BSNT_05688 613 TTCAGGCCTATTGACAAAATTAATGCCATTATCGAAATGTATCCGAGGGG 662
|||.|.||.|||||.|||||.||.||.|||||.||.|||||||||||.||
RBAM_034370__ 850 TTCCGTCCGATTGATAAAATCAACGCGATTATTGAGATGTATCCGAGAGG 899
BSNT_05688 663 GATCGCCGGTTTCAAAAGCTATATGGAGCTCATGGAGACAGAGCCGGACA 712
.||.||||||||.|||||||.|||.||..|..||||.||.|||||.||.|
RBAM_034370__ 900 CATTGCCGGTTTTAAAAGCTTTATAGAAATACTGGAAACGGAGCCTGATA 949
BSNT_05688 713 TTCAGGATTCACCTGATGCGAGAGATGTTTCCGGCCTGAAGGGCAATATC 762
|..||||..|.||..|.||||||.||||.|||||..|.||.||.||||||
RBAM_034370__ 950 TCAAGGACGCCCCGAACGCGAGACATGTGTCCGGTTTAAAAGGGAATATC 999
BSNT_05688 763 CGCTATAAACATGTTTCGTTTGGCTATGATGGCCATCACAATGTCC---T 809
||.|||.|...|||.|||||.||.||.||.| |..||| |||| |
RBAM_034370__ 1000 CGTTATGATGGTGTGTCGTTCGGTTACGAAG---AAAACA--GTCCGGTT 1044
BSNT_05688 810 CAATGAC----ATCAACCTATCCATTCAAGCGGGGGAAACGGTGGCGTTC 855
| ||.| |||||..|.||||||||.||.|||||.||.||.||.|||
RBAM_034370__ 1045 C--TGTCGGGAATCAATTTGTCCATTCATGCCGGGGAGACAGTCGCATTC 1092
BSNT_05688 856 GTCGGTCCGTCAGGTGCGGGGAAATCAACGCTTTGCAGTCTGCTTCCGCG 905
|||||.||.||.||.|||||.|||||||||||....||||||||.|||||
RBAM_034370__ 1093 GTCGGGCCTTCGGGAGCGGGAAAATCAACGCTGACAAGTCTGCTGCCGCG 1142
BSNT_05688 906 TTTTTATGAAGCATCGGAGGGCGACATTACGATTGACGGCATCAGTATAA 955
.||||||||..|.||.||.||||..|||.|.||.|||||.|||..|||.|
RBAM_034370__ 1143 CTTTTATGAGCCGTCTGAAGGCGTGATTTCCATCGACGGAATCGATATTA 1192
BSNT_05688 956 AAGACATGACGCTTTCTTCGTTGCGCGGGCAGATTGGCGTTGTGCAGCAG 1005
|.|||||||||||.||.||.||||||||.||.||.|||||.||.||||||
RBAM_034370__ 1193 AGGACATGACGCTGTCATCATTGCGCGGACAAATCGGCGTCGTCCAGCAG 1242
BSNT_05688 1006 GACGT-TTTCTTATTCTCGGGCACGCTTAGAGAAAATATCGCCTACGGCC 1054
||.|| |||| |.||.||.|||||..|..|.|||||.||.||.|||||.|
RBAM_034370__ 1243 GATGTCTTTC-TGTTTTCCGGCACATTGCGGGAAAACATTGCTTACGGGC 1291
BSNT_05688 1055 GACTAGGCGCATCAGAAGAAGACATTTGGCAAGCTGTGAAGCAGGCGCAT 1104
|.||.|.|||.||.||.|||||.||.|||||.||.||....|||||||||
RBAM_034370__ 1292 GGCTCGACGCGTCTGAGGAAGAAATCTGGCAGGCCGTCCGCCAGGCGCAT 1341
BSNT_05688 1105 CTGGAAGAGCTCGTCCATAAC----ATGCCCGATGGGTTGGATACTATGA 1150
.|.||.||..|.|| .||| || |||||.||.||..|.||..|||
RBAM_034370__ 1342 TTAGAGGACTTGGT---AAACGGGTAT-CCCGACGGTTTAAACACGGTGA 1387
BSNT_05688 1151 TTGGCGAACGTGGCGTGAAGCTTTCCGGCGGGCAAAAACAGCGTCTGTCA 1200
|.|||||.||.|||||||||||.||.||||||||.||.|||||.||.||.
RBAM_034370__ 1388 TCGGCGAGCGCGGCGTGAAGCTGTCAGGCGGGCAGAAGCAGCGGCTTTCC 1437
BSNT_05688 1201 ATTGCAAGGATGTTCTTGAAAAATCCGTCGATCTTGATTCTCGACGAAGC 1250
||.||.||.|||||.||||||||.|||||||||||.|||.|.|||||.||
RBAM_034370__ 1438 ATCGCCAGAATGTTTTTGAAAAACCCGTCGATCTTAATTTTAGACGAGGC 1487
BSNT_05688 1251 CACCTCAGCCCTTGATACAGAGACGGAAGCGGCGATCCAAAAGGCGCTTC 1300
.||.||||||||.||||||||.||||||||.||.||.|||||..||||.|
RBAM_034370__ 1488 TACATCAGCCCTCGATACAGAAACGGAAGCCGCCATTCAAAAATCGCTGC 1537
BSNT_05688 1301 AAGAGTTGTCTGAGGGGCGCACGACGCTTGTCATCGCCCACAGGCTGGCG 1350
|||||.|||||||.||.|||||.||||||||.||||||||..|||||||.
RBAM_034370__ 1538 AAGAGCTGTCTGAAGGACGCACAACGCTTGTGATCGCCCATCGGCTGGCT 1587
BSNT_05688 1351 ACGATCAAAGACGCGGACAGAATTGTAGTTGTCACAAACAACGGTATTGA 1400
|||||.||.||.||||||.|.||.||.||.|||||.||..|.||.||.|.
RBAM_034370__ 1588 ACGATTAAGGATGCGGACCGGATCGTCGTCGTCACGAAAGATGGCATCGC 1637
BSNT_05688 1401 AGAACAAGGCCGTCATCAAGACCTGATCGAAGCCGGAGGCCTATA-CAGC 1449
.||||||||.|.||||.|.||.|||.|.|.|.||||.|||.|.|| |||
RBAM_034370__ 1638 TGAACAAGGTCATCATAAGGAACTGCTGGCATCCGGCGGCATGTACCAG- 1686
BSNT_05688 1450 AGGCTGCATCAAGTGCAATTCGG---GCAAATTGTGCAGCGATAG 1491
||.||.|||||.|..|||||||| ||..||| ||...|
RBAM_034370__ 1687 AGACTTCATCAGGCCCAATTCGGCGAGCTGATT---CATTAA--- 1725
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