Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05685 and RBAM_034360

See Amino acid alignment / Visit BSNT_05685 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:11
# Commandline: needle
#    -asequence dna-align/BSNT_05685.1.9828.seq
#    -bsequence dna-align/RBAM_034360___ywjC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05685-RBAM_034360___ywjC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05685-RBAM_034360___ywjC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05685
# 2: RBAM_034360___ywjC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 274
# Identity:     151/274 (55.1%)
# Similarity:   151/274 (55.1%)
# Gaps:          74/274 (27.0%)
# Score: 539.0
# 
#
#=======================================

BSNT_05685         0 --------------------------------------------------      0
                                                                       
RBAM_034360__      1 ATGAAAAACATTACATCTTTGAAAATAGCCGCTAAGAAGTTCACTTTACG     50

BSNT_05685         1 ----------------------ATGTGCCATTCCGGAAGCCACGAGGTTT     28
                                           .|.|||||..|.|||.|.||||||.|.|
RBAM_034360__     51 AAACATGCTTCAGCTTTATCAGCTTTGCCACACGGGAGGTCACGAGCTGT    100

BSNT_05685        29 ATATTTATTCAAAGAAAACGATGTGCAAAATCAAAAGCT-TAATTGAGCT     77
                     ||||.||.||.||.|||||||||||||||||| ||||.| |.||||||||
RBAM_034360__    101 ATATCTACTCTAAAAAAACGATGTGCAAAATC-AAAGATCTCATTGAGCT    149

BSNT_05685        78 TGAAACATTCCGCATGGCTCATAATGAAAAGGAATATTTGATCGTAGTTG    127
                     .|||||.|||.|.|||||.|||||.|||.|.||||||||.||.|||||.|
RBAM_034360__    150 GGAAACGTTCAGAATGGCCCATAAAGAACAAGAATATTTAATTGTAGTGG    199

BSNT_05685       128 AAGGAACAAAAGCATCACAGCTCATTGAAAAATTCCAAAATCTCATCGAG    177
                     ||||||..|||||....|||||..||||....|||.||.||.|||||||.
RBAM_034360__    200 AAGGAAAGAAAGCGGTGCAGCTTGTTGACCGTTTCAAACATATCATCGAA    249

BSNT_05685       178 CCTGCTGAGAGAGAAGCGCTCTAA    201
                     |||||..|.|.||||||.|..|||
RBAM_034360__    250 CCTGCGCAAAAAGAAGCCCATTAA    273


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