Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05682 and RBAM_034340
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:11
# Commandline: needle
# -asequence dna-align/BSNT_05682___ywjE.1.9828.seq
# -bsequence dna-align/RBAM_034340___ywjE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05682___ywjE-RBAM_034340___ywjE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05682___ywjE-RBAM_034340___ywjE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05682___ywjE
# 2: RBAM_034340___ywjE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1267
# Identity: 897/1267 (70.8%)
# Similarity: 897/1267 (70.8%)
# Gaps: 137/1267 (10.8%)
# Score: 2981.0
#
#
#=======================================
BSNT_05682___ 1 ATGAAAGT-ATTTATCGTGATTATGATCATTGTCGTTATTTTCTTTGC-C 48
|||||.|| |||| |.|||.|..|..|||||.|..|.||.||..|.|| |
RBAM_034340__ 1 ATGAAGGTCATTT-TTGTGTTGCTTGTCATTTTTATCATATTAATCGCAC 49
BSNT_05682___ 49 TTGATTCTGCTTGATAT-CTTCATGGGCCGTGCCGGATACAGAAAAAAGG 97
|| ||.||||||||||| ||.| |.|||||.||.|..||||.||||.|||
RBAM_034340__ 50 TT-ATGCTGCTTGATATGCTGC-TTGGCCGGGCGGCGTACAAAAAACAGG 97
BSNT_05682___ 98 CGTACGAGCCTGTTTTT---TCAAAAAAGAAGAGTGACATCGAATTGATC 144
||||.|||||.|||||| .|.||| ||||||||.|||..|.|.||.
RBAM_034340__ 98 CGTATGAGCCCGTTTTTGACCCGAAA---AAGAGTGATATCACACTCATT 144
BSNT_05682___ 145 CACTGCGGC-GCTGATCTCGTTGAGCGGATGATGAAG---GATATTCGCC 190
||||||||| || ||.| |||.||||..|||||.| |||||.||||
RBAM_034340__ 145 CACTGCGGCAGC-GAGC---TTGTGCGGCAGATGACGGCCGATATCCGCC 190
BSNT_05682___ 191 AGGCCGCCTCTTCTGTTCACATGATGTTTTTTATTATGAAAAATGATGAG 240
|.||||.|||||||.||||.||||||||||||||||||||.||.||..|.
RBAM_034340__ 191 AAGCCGTCTCTTCTATTCATATGATGTTTTTTATTATGAAGAACGACCAA 240
BSNT_05682___ 241 GTCAGCCACAATATGTATACCTTGCTGAAAACAAAAGCCCAAGCTGGCGT 290
||||||||..|.||||.|...||..|||||..|||.|||||.||.|||||
RBAM_034340__ 241 GTCAGCCATGAGATGTTTGATTTATTGAAAGAAAAGGCCCAGGCCGGCGT 290
BSNT_05682___ 291 ATCCGTTTATTTGCTTCTGGATTGGGCGGGCTGCCGGGCAATTAAAAAAA 340
.|||||.|||.||||.||.||||||||||||.||| |.|||.|.|||||
RBAM_034340__ 291 CTCCGTATATCTGCTGCTCGATTGGGCGGGCAGCC-GCCAAGTGAAAAA- 338
BSNT_05682___ 341 CGGCGC------TGCAGACGATGAAAAATGCCGGCGTCCATGTCCATGT- 383
|| |.||.|||||||||||.||||||||.||.||.|||.|
RBAM_034340__ 339 ----GCCTTCCATTCAAACGATGAAAAAAGCCGGCGTTCACGTTCATTTT 384
BSNT_05682___ 384 ---GATGAATCGTCCCCGTTTTCCTTTTTTCTTTTTTCA--CATGCAAAA 428
.||.||.||.| .|||||.|||.| |||||||| | |||||||
RBAM_034340__ 385 CTAAATAAACCGGC----ATTTCCGTTTCT-TTTTTTCAGGC-TGCAAAA 428
BSNT_05682___ 429 ACGGAATCACCGGAAGATTACGGTGATAGACGGAAAAATCGGTTATATCG 478
|||||||||||||||..|.||.||.||.|||||.||||||||.|||.|||
RBAM_034340__ 429 ACGGAATCACCGGAAAGTGACCGTCATTGACGGCAAAATCGGCTATGTCG 478
BSNT_05682___ 479 GCGGGTTTAACATCGCCGAAGAATATCTTGGAAAGAAGGCGAAGTTCGGC 528
||||.|||||.|||||.|||||.||.||.||.||.||.|||||||||||.
RBAM_034340__ 479 GCGGTTTTAATATCGCTGAAGAGTACCTCGGCAAAAAAGCGAAGTTCGGA 528
BSNT_05682___ 529 AATTGGGAGGATTATCATCTGCGCATGATGGGAGAAGGCGTAC--ATGAT 576
||.||||||||||||||.|||||.||||..||.|||||| || ..|||
RBAM_034340__ 529 AACTGGGAGGATTATCACCTGCGGATGACCGGCGAAGGC--ACGGCGGAT 576
BSNT_05682___ 577 CTTCAAACGCTTTTTGCTTCT----GATCTAAAACGAAATACCGGAATCG 622
|||||.||.||||||| | |||||.||||||||.|||||||..|
RBAM_034340__ 577 CTTCAGACTCTTTTTG----TAAGCGATCTGAAACGAAACACCGGAAAAG 622
BSNT_05682___ 623 AACTGGGTT---CGGATGTTTGGCCAAAGCTTCAGC--AAGGGGCTATTT 667
.||..||.| |.||.||||..|| .||.|.|.| |||||..|||.|
RBAM_034340__ 623 CACCCGGATCACCCGAGGTTTATCC--CGCATTATCCGAAGGGAATATCT 670
BSNT_05682___ 668 CTCACAAGATATATGCGACCGACGGTTATTCCCTTGAA-AACATATACTT 716
||||.|.||.|||||||.|.|||||||.|||.|||||| ..||| || |
RBAM_034340__ 671 CTCATAGGACATATGCGTCTGACGGTTTTTCGCTTGAATCGCAT-TA--T 717
BSNT_05682___ 717 GGCCAACATTGCA-----CAAGCG-----AAGAATCGCCTTA-CGGTTTG 755
| ||.|.|||| .|.||| ||.||| |.||| || |
RBAM_034340__ 718 G---AAAACTGCATCCGTAAGGCGGAGAAAAAAAT--CATTATCG----G 758
BSNT_05682___ 756 CACGCCTTATTACATTCC-ATCAAAACCGCTTCAAGAGGCCCTTATT--A 802
||||||||||||..|.|| |.||||| .||||||.||.||.|||||| |
RBAM_034340__ 759 CACGCCTTATTATGTACCGAGCAAAA-AGCTTCAGGAAGCGCTTATTTCA 807
BSNT_05682___ 803 AC--GCAAGAAAAAACGGCGT-------ATCCGTGAGAATCATTGTACCG 843
.| || .||||| ||||| ||| .|.||.||.|||
RBAM_034340__ 808 GCCTGC-CGAAAA---GGCGTCAAAGTCATC-------TTGATCGTGCCG 846
BSNT_05682___ 844 ATGAAATCAGACCATCCGCTGGTACGAGAAGCAGCTTTTACGTATTATTC 893
|||||.||||||||.|||||.||.||.|||.||||||||||.||||||.|
RBAM_034340__ 847 ATGAAGTCAGACCACCCGCTCGTTCGGGAAACAGCTTTTACCTATTATCC 896
BSNT_05682___ 894 GGAGCTCTTGGATGCCGGCTGTCTTATTTATCGTTATTATCAAGGATTTT 943
.|||||..||.|.||||||||.||.||.|||||.|||||||||||.||||
RBAM_034340__ 897 CGAGCTTCTGAAGGCCGGCTGCCTCATCTATCGGTATTATCAAGGCTTTT 946
BSNT_05682___ 944 ATCATGTAAAAGCCCTCATCATAGACGACCATCTCAGCATTATCGGAACA 993
|||||||.|||||..||||.||.||.||||...|||||||||||||.||
RBAM_034340__ 947 ATCATGTCAAAGCTTTCATTATTGATGACCGCATCAGCATTATCGGCAC- 995
BSNT_05682___ 994 GCC-AACTTCGATAAACGAAGCCTGTTTTTAAATGAAGAGGTGAATGTCG 1042
||| ||.||.||||||||.||.|||||.|..||||||||||||||||||.
RBAM_034340__ 996 GCCGAATTTTGATAAACGGAGTCTGTTCTGGAATGAAGAGGTGAATGTCA 1045
BSNT_05682___ 1043 AAATTGATGACGAAGCGTTTACAAGTGAAGT-CTATGCCACGATTGAGGA 1091
..|||.||||.|||||.|||||||..||||| || |.|.||.||..||.|
RBAM_034340__ 1046 TCATTCATGATGAAGCCTTTACAAAGGAAGTGCT-TTCAACCATAAAGCA 1094
BSNT_05682___ 1092 GGATAT-GAAAAAGTCGGAGCGGCTGACGATGGAGGATTTCAGCA----- 1135
|||.|| |||||| ||.||||..||.|| ||| ||.|
RBAM_034340__ 1095 GGACATCGAAAAA-TCCGAGCTTCTCAC--------ATT--AGAAAAAGT 1133
BSNT_05682___ 1136 -----AGCGCACATTCAGGCAGCGCCCGGCGGAATGGCTCGGCAGGGCAT 1180
|||||.|..||||.||||..||.||.||||||||.||.|.|||..
RBAM_034340__ 1134 GAAACAGCGCTCCGTCAGACAGCTTCCTGCAGAATGGCTGGGAAAGGCCA 1183
BSNT_05682___ 1181 TATCTTATTTCTTATAA 1197
|||||||.||.||||||
RBAM_034340__ 1184 TATCTTACTTTTTATAA 1200
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