Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05662 and RBAM_034240
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:10
# Commandline: needle
# -asequence dna-align/BSNT_05662___rho.1.9828.seq
# -bsequence dna-align/RBAM_034240___rho.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05662___rho-RBAM_034240___rho.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05662___rho-RBAM_034240___rho.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05662___rho
# 2: RBAM_034240___rho
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1288
# Identity: 1069/1288 (83.0%)
# Similarity: 1069/1288 (83.0%)
# Gaps: 5/1288 ( 0.4%)
# Score: 4458.0
#
#
#=======================================
BSNT_05662___ 1 ATGAAAGACGTATCTATTTCCTCTTTGGAAAATATGAAATTGAAAGAGCT 50
|||||||||||||||||||||||||||||||||||||||||.|||||.||
RBAM_034240__ 1 ATGAAAGACGTATCTATTTCCTCTTTGGAAAATATGAAATTAAAAGAACT 50
BSNT_05662___ 51 TTATGAACTTGCAAGACATTATAAAATCTCCTATTACAGCAAACTGACAA 100
.||||||||.||.||||||||||||||||||||.||||||||||||||.|
RBAM_034240__ 51 ATATGAACTGGCCAGACATTATAAAATCTCCTACTACAGCAAACTGACTA 100
BSNT_05662___ 101 AAAAAGAACTCATTTTCGCCATTCTGAAAGCGAATGCAGAACAGGAAGAT 150
||||||||.|.||.||.||||||||||||||.||.||.||.|||||.|||
RBAM_034240__ 101 AAAAAGAATTAATCTTTGCCATTCTGAAAGCCAACGCCGAGCAGGAGGAT 150
BSNT_05662___ 151 CTGCTGTTTATGGAAGGCGTTCTTGAGATCATCCAGTCTGAAGGTTTCGG 200
||.|||||||||||||||||.||.||.||||||||.||.|||||.|||||
RBAM_034240__ 151 CTTCTGTTTATGGAAGGCGTGCTCGAAATCATCCAATCGGAAGGATTCGG 200
BSNT_05662___ 201 CTTCCTGAGACCGATCAACTACTCTCCAAGCTCAGAAGACATTTACATCT 250
||||||.||||||||.||.|||||.|||||||||||||||||.|||||.|
RBAM_034240__ 201 CTTCCTCAGACCGATTAATTACTCGCCAAGCTCAGAAGACATCTACATTT 250
BSNT_05662___ 251 CAGCTTCACAAATCCGCCGTTTCGATTTGCGGAACGGAGACAAAGTATCT 300
|.|||||.||.||||||||.||.|||||..|.|||||.|||||||||||.
RBAM_034240__ 251 CTGCTTCCCAGATCCGCCGCTTTGATTTAAGAAACGGTGACAAAGTATCC 300
BSNT_05662___ 301 GGCAAGGTTCGCCCGCCAAAAGAAAATGAGCGTTACTATGGACTTTTGCA 350
||||||||.||.|||||.||||||||.||.||.||.||.|||||||||||
RBAM_034240__ 301 GGCAAGGTGCGTCCGCCGAAAGAAAACGAACGCTATTACGGACTTTTGCA 350
BSNT_05662___ 351 CGTTGAAGCAGTAAACGGGGATGATCCCGAATCTGCAAAAGAGCGTGTGC 400
|||||||||.|||||.||.||||||||.||||||||.||||||||.||.|
RBAM_034240__ 351 CGTTGAAGCGGTAAATGGAGATGATCCGGAATCTGCGAAAGAGCGCGTCC 400
BSNT_05662___ 401 ATTTCCCGGCTCTTACGCCCCTTTATCCGGATCGTCAAATGGTGCTTGAA 450
||||.||.||.||.||.||.|||||||||||.||.||||||||||||||.
RBAM_034240__ 401 ATTTTCCTGCGCTGACTCCGCTTTATCCGGACCGCCAAATGGTGCTTGAG 450
BSNT_05662___ 451 ACAAAGCCGAACTTCT-TGTCTACAAGAATTATGGACATGATGGCGCCGG 499
||.||.||||| ||.| |.||.|||||||||.|.||.||||||||.||.|
RBAM_034240__ 451 ACGAAACCGAA-TTATCTCTCAACAAGAATTCTCGATATGATGGCTCCCG 499
BSNT_05662___ 500 TTGGATTTGGGCAGCGCGGATTGATTGTTGCGCCGCCGAAAGCCGGAAAA 549
|.||.||.||.||||||||..||||.||.|||||||||||||||||.|||
RBAM_034240__ 500 TCGGTTTCGGCCAGCGCGGTCTGATCGTGGCGCCGCCGAAAGCCGGTAAA 549
BSNT_05662___ 550 ACGATGCTGCTGAAGGAAATTGCCAACAGCATTACAGCGAACCAGCCTGA 599
||.||||||.|.||.|||||.||.|||||||||||..|.||.||||||||
RBAM_034240__ 550 ACCATGCTGTTAAAAGAAATCGCTAACAGCATTACGACAAATCAGCCTGA 599
BSNT_05662___ 600 AGCAGAGCTGATCGTGCTTTTAATTGACGAAAGACCTGAGGAAGTAACCG 649
.||.||..|||||||.||.||||||||.||||||||.||.||||||||.|
RBAM_034240__ 600 CGCTGAATTGATCGTTCTCTTAATTGATGAAAGACCGGAAGAAGTAACGG 649
BSNT_05662___ 650 ATATCGAGCGCTCTGTAGCTGGGGATGTCGTCAGCTCAACGTTTGATGAA 699
||||.||.||.||.|||||.||.||||||||||||||.|||||.||||||
RBAM_034240__ 650 ATATTGAACGTTCCGTAGCGGGCGATGTCGTCAGCTCGACGTTCGATGAA 699
BSNT_05662___ 700 GTGCCGGAAAACCATATCAAAGTGGCCGAGCTTGTGCTTGAACGTGCGAT 749
|||||||||||.||.||.||.||.||.|||||||||||||||||.|||||
RBAM_034240__ 700 GTGCCGGAAAATCACATTAAGGTAGCGGAGCTTGTGCTTGAACGGGCGAT 749
BSNT_05662___ 750 GCGTCTCGTGGAACACAAAAAAGACGTCATTATCCTGATGGACAGCATCA 799
|||||||||.|||||.|||||||||||.||.||.||||||||||||||.|
RBAM_034240__ 750 GCGTCTCGTTGAACATAAAAAAGACGTTATCATTCTGATGGACAGCATTA 799
BSNT_05662___ 800 CACGGCTTGCCCGCGCCTACAACTTAGTGATTCCGCCAAGTGGAAGAACG 849
|.||.||.||.||.|||||||||.|.||.||.||||||||.|||.|.|||
RBAM_034240__ 800 CCCGACTGGCACGGGCCTACAACCTCGTTATCCCGCCAAGCGGACGTACG 849
BSNT_05662___ 850 CTTTCCGGGGGGATTGACCCAGCGGCGTTCCACCGTCCGAAACGCTTCTT 899
||||||||.|||||||||||.||.||||||||.||||||||.|||||.||
RBAM_034240__ 850 CTTTCCGGCGGGATTGACCCGGCTGCGTTCCATCGTCCGAAGCGCTTTTT 899
BSNT_05662___ 900 TGGGGCTGCGAGAAATATCGAAGAGGGCGGCAGCTTAACCATCCTTGCTA 949
.||.||.||||||||.||.||||||||||||||..|.|||||..|.||.|
RBAM_034240__ 900 CGGTGCCGCGAGAAACATTGAAGAGGGCGGCAGTCTGACCATTTTGGCGA 949
BSNT_05662___ 950 CGGCTCTGGTTGATACAGGTTCACGTATGGATGATGTCATTTATGAAGAA 999
||||.||.||.||.||.||.||.||.||||||||.|||||.||||||||.
RBAM_034240__ 950 CGGCGCTCGTAGACACGGGCTCCCGGATGGATGACGTCATCTATGAAGAG 999
BSNT_05662___ 1000 TTCAAGGGAACAGGCAACATGGAACTCCATCTTGACCGCTCTCTTGCCGA 1049
||.||.|||||.|||||||||||.||.||.||||||||.||||||||.||
RBAM_034240__ 1000 TTTAAAGGAACGGGCAACATGGAGCTTCACCTTGACCGTTCTCTTGCGGA 1049
BSNT_05662___ 1050 GCGCCGCATCTTCCCTGCCATCGATATCCGCCGTTCAGGAACGCGCAAAG 1099
..|.||.||.|||||.||.||||||||||||||.||.||.||.||.||.|
RBAM_034240__ 1050 AAGACGGATTTTCCCGGCGATCGATATCCGCCGCTCCGGCACACGGAAGG 1099
BSNT_05662___ 1100 AAGAACTGCTTGTGCCTAAAGAGCATCTTGATCGTTTATGGTCTATCCGC 1149
||||.|||||.|||||.||||||||||||||.|||||||||.|.||||||
RBAM_034240__ 1100 AAGAGCTGCTCGTGCCGAAAGAGCATCTTGACCGTTTATGGGCGATCCGC 1149
BSNT_05662___ 1150 AAAACGATGTCTGATTCACCTGATTTCGCAGAAAAGTTCATGAGAAAAAT 1199
|||.|||||||||||||.||.||.||||||||.|||||.|||||||||||
RBAM_034240__ 1150 AAATCGATGTCTGATTCTCCGGACTTCGCAGAGAAGTTTATGAGAAAAAT 1199
BSNT_05662___ 1200 GAAAAAAACCAAAACAAACCAGGAATTTTTCGATATTCTCAATCAAGAAT 1249
|||||||||.|||||.||.||||||||.||||||.|..||||.|||||||
RBAM_034240__ 1200 GAAAAAAACAAAAACGAATCAGGAATTCTTCGATCTGATCAACCAAGAAT 1249
BSNT_05662___ 1250 GGAAACAGGCAAATCT---ATCATCTGCAAGAAGGTAA 1284
||||.||||||||.|| ||||||.||..|..|.|.|
RBAM_034240__ 1250 GGAAGCAGGCAAACCTTTCATCATCAGCCCGCCGCTGA 1287
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