Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05658 and RBAM_034220
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:09
# Commandline: needle
# -asequence dna-align/BSNT_05658___tdk.1.9828.seq
# -bsequence dna-align/RBAM_034220___tdk.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05658___tdk-RBAM_034220___tdk.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05658___tdk-RBAM_034220___tdk.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05658___tdk
# 2: RBAM_034220___tdk
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 601
# Identity: 467/601 (77.7%)
# Similarity: 467/601 (77.7%)
# Gaps: 29/601 ( 4.8%)
# Score: 1865.0
#
#
#=======================================
BSNT_05658___ 1 ATGTACATAATGAAACAAAGCGGGTGGCTTGAGCTGATTTGCGGCAGCAT 50
||||||||||||||.||||||||.||||||||||||||.|||||||||||
RBAM_034220__ 1 ATGTACATAATGAAGCAAAGCGGATGGCTTGAGCTGATATGCGGCAGCAT 50
BSNT_05658___ 51 GTTCTCGGGGAAATCTGAAGAGCTGATCAGAAGAGTGAAGAGAGCAACTT 100
||||||.||||||||.||||||||||||.|.||||||||.|||||.||.|
RBAM_034220__ 51 GTTCTCTGGGAAATCAGAAGAGCTGATCCGCAGAGTGAAAAGAGCGACAT 100
BSNT_05658___ 101 ATGCCAAGCAGGAAGTCAGGGTATTTAAGCCTGTAATTGATAACCGATAC 150
||||.||||||||.||||.|||.||.||.||||..||||||||.||.|||
RBAM_034220__ 101 ATGCGAAGCAGGAGGTCAAGGTGTTCAAACCTGCCATTGATAATCGCTAC 150
BSNT_05658___ 151 AGCGAAGCTGCTGTTGTCTCCCATAATGGAACATCGATGACGAGCTATGC 200
||.||.|..||.||.||.||.||.||.||.|||||.|||||.|||.|.|.
RBAM_034220__ 151 AGTGAGGAGGCCGTCGTTTCTCACAACGGCACATCCATGACAAGCCACGT 200
BSNT_05658___ 201 CATTTCGTCTGCTGCGGACATTTGGGATCACATCAGTGAAAGTACAGATG 250
|||.||||||.|.||.||.||.||||||||.|||||||||||.||.||.|
RBAM_034220__ 201 CATCTCGTCTTCGGCTGAAATATGGGATCATATCAGTGAAAGCACCGACG 250
BSNT_05658___ 251 TGATTGCGGTTGATGAAGTGCAGTTTT--------TTGATCAGGAAATTG 292
|.||.|||||.|||||||||||||||| |.|||||
RBAM_034220__ 251 TCATCGCGGTAGATGAAGTGCAGTTTTTCGGCGAATCGATCA-------- 292
BSNT_05658___ 293 TTGAGGTTTTATCATCTCTTGCCGATAAAGGCTACCGTGTGATAGCAGCA 342
|.|..|..|||||.||.|||||.|||||||||||.|||||.||.||.||.
RBAM_034220__ 293 TCGGCGACTTATCCTCGCTTGCGGATAAAGGCTATCGTGTCATCGCGGCC 342
BSNT_05658___ 343 GGCCTTGATATGGATTTTAGGGGAGAGCCGTTCGGTGTCGTCCCGAATAT 392
||.||||||||||||||..||||||||||.|||||.||.||.||||||.|
RBAM_034220__ 343 GGACTTGATATGGATTTCCGGGGAGAGCCTTTCGGCGTGGTGCCGAATCT 392
BSNT_05658___ 393 CATGGCGATTGCGGAAAGTGTGACAAAGCTGCAAGCCGTCTGTTCTGTTT 442
.||||||.||||.|||...|||||.||||||||.||.|||||.||.||||
RBAM_034220__ 393 GATGGCGGTTGCCGAATCGGTGACGAAGCTGCAGGCGGTCTGCTCCGTTT 442
BSNT_05658___ 443 GCGGATCACCGGCGAGCAGAACACAGCGCCTCATTGACGGCAAACCTGCT 492
|||||||.|||||.|||.|.||.|||||..|.||||||||.||.||.|||
RBAM_034220__ 443 GCGGATCGCCGGCAAGCCGTACGCAGCGTTTGATTGACGGGAAGCCCGCT 492
BSNT_05658___ 493 TCTTACGATGATCCGGTCATTTTGGTTGGTGCATCTGAATCATATGAAGC 542
||.||.|||||||||||||||||.||.||.||.||.||.|||||.|||||
RBAM_034220__ 493 TCCTATGATGATCCGGTCATTTTAGTCGGCGCGTCGGAGTCATACGAAGC 542
BSNT_05658___ 543 AAGATGCAGACATCATCACGAAGTCCCAGGAAAATCTAAAAAATAG---- 588
.|||||||||||||||||||||||.|| || ||||||.||
RBAM_034220__ 543 GAGATGCAGACATCATCACGAAGTGCC--GA------AAAAAACAGACTG 584
BSNT_05658___ 588 - 588
RBAM_034220__ 585 A 585
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