Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05653 and RBAM_034180
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:09
# Commandline: needle
# -asequence dna-align/BSNT_05653___ywkD.1.9828.seq
# -bsequence dna-align/RBAM_034180___ywkD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05653___ywkD-RBAM_034180___ywkD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05653___ywkD-RBAM_034180___ywkD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05653___ywkD
# 2: RBAM_034180___ywkD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 398
# Identity: 294/398 (73.9%)
# Similarity: 294/398 (73.9%)
# Gaps: 25/398 ( 6.3%)
# Score: 1038.5
#
#
#=======================================
BSNT_05653___ 1 ATGTTGCTGAAATCCATACATCATATTGCAATCATATGTTCAGATTACGA 50
.|||||||||||||.||.|||||.|||||||||||.||.|||||.||
RBAM_034180__ 1 ---ATGCTGAAATCCATCCACCATATAGCAATCATATGCTCTGATTATGA 47
BSNT_05653___ 51 AAAGTCGAAAGCTTTCTACGTAC--ATAAGCTTGGTTTTCAGG--TGATT 96
|||||||||||||||.||| || |.|..||.||||| .|| |.||.
RBAM_034180__ 48 AAAGTCGAAAGCTTTTTAC--ACCGAGATTCTCGGTTT--CGGCATTATA 93
BSNT_05653___ 97 CAAGAAACGTACCGCGAAGAGCGCGGCTCCTATAAGCTTGAT-TTGTCGC 145
.|||||||.|||||..|.||.||.|..||.|||||.|||||| ||| |||
RBAM_034180__ 94 AAAGAAACATACCGAAAGGAACGGGAATCTTATAAACTTGATCTTG-CGC 142
BSNT_05653___ 146 TTAACGGCTCGTATGTCATTGAGCTGTTCTCGTTTCCCGATCCGCCCGAA 195
|..|||||.||||.|..|||||..||||.||.||||||||||||||||||
RBAM_034180__ 143 TGGACGGCGCGTACGCGATTGAATTGTTTTCCTTTCCCGATCCGCCCGAA 192
BSNT_05653___ 196 CGACAAACCCGGCCTGAAGCCGCAGGCCTGCGCCACCTCGCCTTTACAGT 245
||.|..|||.|.||.||||||||.||.||.||.||.||||||||.||.||
RBAM_034180__ 193 CGGCCGACCAGACCGGAAGCCGCGGGTCTACGGCATCTCGCCTTCACCGT 242
BSNT_05653___ 246 ---CGGCAGCTTGGATAAAGCGG--TTCA-AGAGCTTCATGAAAAAGGAA 289
|| |.|||| ||||.| .||| ||||.|..|.|||||.||..
RBAM_034180__ 243 AAACG--ATCTTG----AAGCAGCCGTCAGAGAGTTAAAGGAAAAGGGCG 286
BSNT_05653___ 290 TCGAAACAGAGCCAATCAGAACAGATCCGCTGACCGGCAAGCGTTTCACC 339
|||..|||||.|||||||||||.|||||||||||.||.||.||.||.|||
RBAM_034180__ 287 TCGGCACAGAACCAATCAGAACCGATCCGCTGACGGGGAAACGGTTTACC 336
BSNT_05653___ 340 TTCTTTTTTGATCCTGACCAGCTTCCATTAGAACTGTATGAACAATAA 387
||.||.||||||||.|||.|||||||..|.|||.||||||||...|||
RBAM_034180__ 337 TTTTTCTTTGATCCCGACAAGCTTCCGCTTGAATTGTATGAAGCGTAA 384
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