Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05644 and RBAM_034110
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:08
# Commandline: needle
# -asequence dna-align/BSNT_05644___ywlC.1.9828.seq
# -bsequence dna-align/RBAM_034110___ywlC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05644___ywlC-RBAM_034110___ywlC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05644___ywlC-RBAM_034110___ywlC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05644___ywlC
# 2: RBAM_034110___ywlC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1088
# Identity: 777/1088 (71.4%)
# Similarity: 777/1088 (71.4%)
# Gaps: 94/1088 ( 8.6%)
# Score: 2723.0
#
#
#=======================================
BSNT_05644___ 1 ATGAAAACGAAAAGATGGTTTGTGGA-TGTAACTGACGAGTTATCCACAA 49
||||||||.|.||||||||||||||| ||| .|.|..||.||||||||||
RBAM_034110__ 1 ATGAAAACAAGAAGATGGTTTGTGGATTGT-TCCGCAGAATTATCCACAA 49
BSNT_05644___ 50 ATGATCCACAAATTGCACAAGCAGCCGCTTTGCTCCGAGAAAATGAGGTC 99
..|||||.||.|||.|||||||.||.|..|||||.||..|.||||||||.
RBAM_034110__ 50 CCGATCCCCAGATTACACAAGCCGCGGAATTGCTGCGGCAGAATGAGGTT 99
BSNT_05644___ 100 GTTGCCTTTCCGACAGAAACAGTATATGGCCTAGGCGCAAACGCAAAAAA 149
||.||.||||||||||||||.||.||.||.||.|||||.|||||..||||
RBAM_034110__ 100 GTGGCTTTTCCGACAGAAACCGTTTACGGACTGGGCGCTAACGCTGAAAA 149
BSNT_05644___ 150 TACGGATGCCGTCAAAAAAATATATGAGGCGAAAGGACGGCCGAGCGATA 199
||||||.|||||.|..|||||||||||||||||||||.||||||||||||
RBAM_034110__ 150 TACGGAAGCCGTAACGAAAATATATGAGGCGAAAGGAAGGCCGAGCGATA 199
BSNT_05644___ 200 ATCCCCTGATTGTCCACATTGCGGATATCAGCCAGCTTGA-GGATTTAAC 248
|.||.||||||||.||.||..|..|||||||||||||||| .|.||||
RBAM_034110__ 200 ACCCGCTGATTGTGCATATATCCCATATCAGCCAGCTTGATCGTTTTA-- 247
BSNT_05644___ 249 GGGCCCAGC-----GCCGGAAAAGGCGAAAACATTGATGAAACGGTTTTG 293
.|||| .||.||.|.||||||||...|.|||||.|..||.||
RBAM_034110__ 248 ----TCAGCCATATTCCTGAGACGGCGAAAAAGCTTATGAAGCTATTCTG 293
BSNT_05644___ 294 GCCGGGAGCACTTACGCTCATACTGCCTTGCAAACCTGGTGCGCTTTCAC 343
||||||.||.||.||.||..|.|||||.||.||.||.||||.|||.||||
RBAM_034110__ 294 GCCGGGGGCGCTGACCCTTGTTCTGCCGTGTAAGCCCGGTGTGCTGTCAC 343
BSNT_05644___ 344 CTCGTGTAACGGCAGGTCTTGATACGGTTGCCATTAGAATGCCGGATCAT 393
|.|||||.||.||.||.|||||.|||||.||..|.||||||||.||||||
RBAM_034110__ 344 CCCGTGTCACCGCGGGACTTGAGACGGTAGCGGTCAGAATGCCTGATCAT 393
BSNT_05644___ 394 C------CACTTGCCCTTGCATTGATTC-GCGAATCG---GGACTGCCGA 433
| ||.|.||||| || || || ||| ||||||||||
RBAM_034110__ 394 CCGGTAGCATTAGCCCT--CA-----TCAGC---TCGGCCGGACTGCCGA 433
BSNT_05644___ 434 TTGCAGCACCGAGCGCCAATCTATCAGGCAAGCCAAGTCCCACAAAAGCA 483
|.||.||.||||||||||||.|||||||.||.||.||.||.||.||.||.
RBAM_034110__ 434 TCGCCGCGCCGAGCGCCAATTTATCAGGAAAACCGAGCCCGACGAAGGCC 483
BSNT_05644___ 484 GAGCATGTGGCACACGACTTGGATGGCCGCATAGCCGGTATTATGGATGG 533
||||||||.||.||.||.||..|.||||||||.|||||.|||.||||.||
RBAM_034110__ 484 GAGCATGTAGCCCATGATTTAAACGGCCGCATTGCCGGCATTGTGGACGG 533
BSNT_05644___ 534 AGGCCCTACCGGAATCGGGGTTGAATCAACCGTGCTTTCATGTGCGGACG 583
.|||.|.||.||||||||.||.|||||||||||.||.||.|||.||| |
RBAM_034110__ 534 CGGCGCGACGGGAATCGGAGTGGAATCAACCGTTCTGTCCTGTACGG--G 581
BSNT_05644___ 584 ---ACATCCCTGTTCTCCTGCGTCCTGGCGGTATTACGAAGGAACAAATT 630
|||.||| ||.||.||.|||||.|||||..|.||.||.||.||.|||
RBAM_034110__ 582 GAAACAGCCC-GTGCTGCTTCGTCCGGGCGGCGTGACAAAAGAGCAGATT 630
BSNT_05644___ 631 GAAGCGGTGATCGGGCCGATTCATGTGGATAAAGGGCTCAGCGATCAAAA 680
|||.|.|....|||.|||||||.|||||||||||||||.|.|||..||.|
RBAM_034110__ 631 GAATCCGCCGCCGGTCCGATTCTTGTGGATAAAGGGCTGACCGAAGAAGA 680
BSNT_05644___ 681 CGAGAAGCCGATTTCTCCAGGGATGAAATATACACATTATGCGCCGACAG 730
.|||...||.||||||||.||.|||||||||||||||||.|||||..|.|
RBAM_034110__ 681 TGAGGTTCCTATTTCTCCCGGTATGAAATATACACATTACGCGCCTTCTG 730
BSNT_05644___ 731 CGC------CTCTTGCCATTTGCGAAGGCAGCCCAGAGCGCATTCAGCAC 774
||| ||.|||||.||.|| ||| ||||.|||
RBAM_034110__ 731 CGCCGATGGCTATTGCCGTTGGC---GGC-GCCCGGAG------------ 764
BSNT_05644___ 775 CTCATTCAAGA------------ATATCAACAG--GGCGGAAGACGGGTC 810
.|||||||| |||| ||.|| ||.|||| |||..||
RBAM_034110__ 765 --AATTCAAGAACTGGCAGACGCATAT-AAAAGCCGGGGGAA-ACGAATC 810
BSNT_05644___ 811 GGTGTCCTGACGACAGAAGAAAACGCGGGCGTTTATTCC---GCTGATTA 857
||..|..||||.||||||||.||||| ||.|..||.| ||||||||
RBAM_034110__ 811 GGCATTTTGACAACAGAAGAGAACGC---CGATAGTTACCAGGCTGATTA 857
BSNT_05644___ 858 TGTGAAGAGCTGCGGAAGACGGGCTCAGCTTGAGACTGTTGCGGCAGGGC 907
|...|||..||||||.|||||.||..|.|||||.||.||.|||.|.|...
RBAM_034110__ 858 TACCAAGGTCTGCGGCAGACGCGCCGACCTTGAAACAGTGGCGTCCGCCT 907
BSNT_05644___ 908 TGTATGATGCTTTGCGCAGCTTTGATGA----GAATAAGGTGGATTTGAT 953
|.||.|||||..|.|||||||||||||| ||| |||||..||||
RBAM_034110__ 908 TATACGATGCGCTCCGCAGCTTTGATGAAGCGGAA----GTGGACATGAT 953
BSNT_05644___ 954 TATCTCGGAATCCTTTCCGGACACAGGTGTCGGTCTCGCCATTATGAACA 1003
|||.||.||.|||||||||||.||.||.||.||.||.|||||||||||||
RBAM_034110__ 954 TATTTCTGAGTCCTTTCCGGATACCGGAGTGGGGCTTGCCATTATGAACA 1003
BSNT_05644___ 1004 GGCTGATGAAAGCCGCCGGAGGAAGAGTGATTCGCTGA 1041
||||||||||||||||.||.||.|..||.||.|..|.|
RBAM_034110__ 1004 GGCTGATGAAAGCCGCAGGCGGCACCGTTATCCATTAA 1041
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