Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05643 and RBAM_034100

See Amino acid alignment / Visit BSNT_05643 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:08
# Commandline: needle
#    -asequence dna-align/BSNT_05643___ywlD.1.9828.seq
#    -bsequence dna-align/RBAM_034100___ywlD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05643___ywlD-RBAM_034100___ywlD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05643___ywlD-RBAM_034100___ywlD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05643___ywlD
# 2: RBAM_034100___ywlD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 560
# Identity:     412/560 (73.6%)
# Similarity:   412/560 (73.6%)
# Gaps:           4/560 ( 0.7%)
# Score: 1444.0
# 
#
#=======================================

BSNT_05643___      1 ATGTCGGATTTGTTTATAGGCGAACTGATTACATTAAGCATCATGGCGTT     50
                     ||||||.||.|.||.||.||.|||||..|..|.||||||||||||||.||
RBAM_034100__      1 ATGTCGAATCTATTCATCGGGGAACTTGTCTCCTTAAGCATCATGGCATT     50

BSNT_05643___     51 TGCTTTAGGGATGGATGCTTTTTCTGTAGGCCTTGGAATGGGCATGGTCA    100
                     ||||||.||||.||||||.|||||.||.||.||.||||||||.|||.|..
RBAM_034100__     51 TGCTTTGGGGACGGATGCCTTTTCCGTCGGGCTCGGAATGGGAATGATTC    100

BSNT_05643___    101 AACT-TAGAAAGAAGCAGATATTCTATATTGGTTTCATCATCGGCCTCTT    149
                     |.|| .||||| ||.|||||.||..||||.||..|..|||||||.||.||
RBAM_034100__    101 AGCTGAAGAAA-AAACAGATTTTTCATATAGGGGTTGTCATCGGGCTGTT    149

BSNT_05643___    150 TCACGTCATCATGCCTCTCGCAGGGATGGCGGCCGGTAACATGCTGTCAG    199
                     |||.|||||.|||||.||.||.||.|||||||||||..|..|||||||.|
RBAM_034100__    150 TCATGTCATGATGCCGCTTGCGGGAATGGCGGCCGGGCATCTGCTGTCCG    199

BSNT_05643___    200 GGCTCCTCGGCGTGTTAGCGGTTTATATCGGTGGGGCGCTGCTTTTTGTT    249
                     |..|.||.||..||.|.||.|||||.|||||.||..|.||.|||||..||
RBAM_034100__    200 GTTTTCTGGGGATGCTCGCCGTTTACATCGGCGGATCTCTTCTTTTCATT    249

BSNT_05643___    250 CTTGGGGTTCAAATGCTTATGGCCTCTTTTAAACAGTCAGAAGAACGATT    299
                     .|.|||||.||.|||.|.||.|||.|.||||||||.|||||.|..|...|
RBAM_034100__    250 TTAGGGGTGCAGATGATCATCGCCGCGTTTAAACAATCAGACGGGCCGCT    299

BSNT_05643___    300 CATGTCACCGGCAGGGCCGGGCTTATTGCTGTTTGCCATCGGCGTCAGCC    349
                     |||.||.||||||||..||||..|.|||||||||||.|||||.|||||.|
RBAM_034100__    300 CATATCTCCGGCAGGCTCGGGACTGTTGCTGTTTGCGATCGGTGTCAGTC    349

BSNT_05643___    350 TTGACAGCTTTTCCGTCGGCTTGAGCTTGGGGATATACGGCTCGCATCCG    399
                     |.|||||||||||.|||||..|.||..|.|||||..|||||||..||||.
RBAM_034100__    350 TGGACAGCTTTTCTGTCGGGCTCAGTCTCGGGATGAACGGCTCCAATCCA    399

BSNT_05643___    400 TTCCTCACAATTACCCTGTTCGGGCTGTTTAGCATGATGTTGACATGGCT    449
                     ||.||..|..||||.|||||||||.|.||.||||...|.||.||||||..
RBAM_034100__    400 TTTCTGGCCGTTACGCTGTTCGGGGTCTTCAGCACCGTTTTAACATGGGC    449

BSNT_05643___    450 GGGCCTGCTGGTCGGAAAACAAGTGCAGTCATGGCTTGGCACATACAGCG    499
                     ||||||..|||..||||.|.|.||||||||.|||||.|||.|.|||||||
RBAM_034100__    450 GGGCCTTTTGGCGGGAAGAAAGGTGCAGTCGTGGCTCGGCTCGTACAGCG    499

BSNT_05643___    500 AAGCGCTCGGGGGCATCATATTAATCGTGTTT-GGACTAAAGCTGCTTTT    548
                     |||||||.||.||...|||.||.|||| |||| ||.||.||.||||||||
RBAM_034100__    500 AAGCGCTTGGCGGAGCCATTTTGATCG-GTTTCGGGCTGAAACTGCTTTT    548

BSNT_05643___    549 GCCAATTTAA    558
                     .||..|.|||
RBAM_034100__    549 ACCGGTATAA    558


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