Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05641 and RBAM_034090
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:08
# Commandline: needle
# -asequence dna-align/BSNT_05641___ywlE.1.9828.seq
# -bsequence dna-align/RBAM_034090___ywlE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05641___ywlE-RBAM_034090___ywlE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05641___ywlE-RBAM_034090___ywlE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05641___ywlE
# 2: RBAM_034090___ywlE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 478
# Identity: 340/478 (71.1%)
# Similarity: 340/478 (71.1%)
# Gaps: 47/478 ( 9.8%)
# Score: 1160.5
#
#
#=======================================
BSNT_05641___ 1 ATGGATATTATTTTTGTCTGTACTGGAAATACGTGCCGCAGCCCAATGGC 50
|||.|.||.||.|||||.|||||.||.||||||||||||||.||.|||||
RBAM_034090__ 1 ATGAAAATAATCTTTGTATGTACAGGCAATACGTGCCGCAGTCCTATGGC 50
BSNT_05641___ 51 TGAGGCGCTTTTTAAATCAATTGCAGAAATGGAAGGGCTGAATGTCAATG 100
||||||.|||||||||||.||||||||||.|.||||||||.|.||||..|
RBAM_034090__ 51 TGAGGCTCTTTTTAAATCCATTGCAGAAACGAAAGGGCTGGACGTCAGCG 100
BSNT_05641___ 101 TCCGCTCGGCAGGCGTGTTTGCTTCGCCTAATGGGAAAGCGAC-GCCTCA 149
|..|||||||.|||||.||.||.||.||.||.||.||||||.| ||| ||
RBAM_034090__ 101 TAAGCTCGGCCGGCGTATTCGCGTCTCCGAACGGAAAAGCGTCAGCC-CA 149
BSNT_05641___ 150 TGCAGTCGAAGCGCTGTTTGAAAAACACATTGCCCTTAATCA-TGTGTCT 198
|||.||.|||||||||||||||||||..||.||.||.||||| .|| ||.
RBAM_034090__ 150 TGCCGTGGAAGCGCTGTTTGAAAAACGGATCGCTCTCAATCACAGT-TCA 198
BSNT_05641___ 199 TCTCCATTAACTGAAGAACTGATGGAATCGGCTGATTTGGTTCTGGCTAT 248
|||||.|||.|.|||||||..||.||..||||||||.||||.|||||.||
RBAM_034090__ 199 TCTCCCTTATCGGAAGAACATATCGAGACGGCTGATCTGGTGCTGGCGAT 248
BSNT_05641___ 249 GACCCATCAGCACAAACAGATCATTGCCAGCCAATTTGGACGTTATC--- 295
|||..|.||||||||||||.|.|||| || ||.||.||||
RBAM_034090__ 249 GACGGAACAGCACAAACAGCTGATTG------AA---GGCCGATATCAAA 289
BSNT_05641___ 296 ---GT---GATAAAGTGTTTACGTTAAAAGAATATGTTACAGGCAG-CCA 338
|| |..|||||.|||||..|.||||||||.||.|| ||.|| ..|
RBAM_034090__ 290 ACAGTCAGGGCAAAGTCTTTACCATTAAAGAATACGTAAC-GGGAGAAAA 338
BSNT_05641___ 339 TGGTGATGTCATC-GATCCGTTCGGCGGCTCAATTGACATCTATAAACAA 387
.||.|||.|| || ||.|||||||||||..|..||||..|.|||||||||
RBAM_034090__ 339 CGGCGATATC-TCTGACCCGTTCGGCGGTCCGCTTGATGTTTATAAACAA 387
BSNT_05641___ 388 ACGCGAGATGAGCTTGAAGAGCTTC-------TTCGGCAGCTGGCAAAAC 430
|||||.||.||.||.||.|||||.| ||.|||.|.| .||.
RBAM_034090__ 388 ACGCGGGACGAACTGGAGGAGCTGCTGACCCTTTTGGCTGAT----CAAT 433
BSNT_05641___ 431 AGCT-----GAAAAAAGACCGCAGATAA 453
.||| |||||| |||..|||
RBAM_034090__ 434 TGCTTGACGGAAAAA-----GCAAGTAA 456
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