Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05601 and RBAM_033860
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:06
# Commandline: needle
# -asequence dna-align/BSNT_05601___rapB.1.9828.seq
# -bsequence dna-align/RBAM_033860___rapB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05601___rapB-RBAM_033860___rapB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05601___rapB-RBAM_033860___rapB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05601___rapB
# 2: RBAM_033860___rapB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1151
# Identity: 869/1151 (75.5%)
# Similarity: 869/1151 (75.5%)
# Gaps: 37/1151 ( 3.2%)
# Score: 3194.5
#
#
#=======================================
BSNT_05601___ 1 ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAA 50
|||.||||.||||||||.||||||||||||||.|||||.||.|||||.||
RBAM_033860__ 1 ATGACCGCATACGAGATTCCGTCATCTCAAGTTGGAGTCAAGATCAACAA 50
BSNT_05601___ 51 GTGGTATAAGCACATTTTAGCATTTCAAGTGGCTGATGCCGTAAAGCTGA 100
.|||||.||||||||||||||.|||||||.||||||||||.|||||||||
RBAM_033860__ 51 ATGGTACAAGCACATTTTAGCGTTTCAAGCGGCTGATGCCATAAAGCTGA 100
BSNT_05601___ 101 AGGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTT 150
|.||.|||||||||...|||||..|||..|||||.||.||.||||||||.
RBAM_033860__ 101 AAGAGGAAATTGATGAGGATATACAACGTATGGAGGAAGACCAGCTGCTG 150
BSNT_05601___ 151 CTCCTGTATTATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTA 200
||..|.|||||||||||||||||||||||.||.||.||||||||.|||||
RBAM_033860__ 151 CTGTTATATTATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTA 200
BSNT_05601___ 201 TGTAAAGCCTGACCTGCA-CGAGGAATCTCAGCTTCAATATCGTGAATTG 249
.||.|||||.|| .|||| |||..||||.|||.||||.||..|.||..||
RBAM_033860__ 201 CGTCAAGCCGGA-ATGCACCGAACAATCACAGATTCAGTACAGCGAGCTG 249
BSNT_05601___ 250 ATCAAA--ACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAG 297
|||| |||.|.||||||| .|||||||||.||.|||.|.||||||
RBAM_033860__ 250 --CAAAAGACGATCGAAAGCA---CGGACAGCATATCGGGACTGTCTGAG 294
BSNT_05601___ 298 TATTATTTTCACTTGTTTAGAGGAATGTACGAATTTGAACAGAACAATTA 347
||||||||.||.|||||.|||||.|||||.|||||.||.||.||.||.||
RBAM_033860__ 295 TATTATTTCCATTTGTTCAGAGGGATGTATGAATTCGATCACAATAACTA 344
BSNT_05601___ 348 CATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTG 397
..|..|||||||.||.|||||.||||||||.||.||..|.|||.|.||||
RBAM_033860__ 345 TGTTGCGGCTATTTCTTTTTACCGGAAAGCGGAAAAACTCCTTTCATTTG 394
BSNT_05601___ 398 TAGAAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTC 447
|.||.|||||.||.||.||.||||||||.|||||.||..||.|.|||||.
RBAM_033860__ 395 TCGAGGATGATATAGAGAGGGCGGAATTCCATTTCAAGATGTCTGAAGTG 444
BSNT_05601___ 448 TTTTATATTATGAAGCAGACGCACTTTTCCATGAACCACGCTGTACAGGC 497
||||||.|.|||||||||||.||.|||||||||||.||||...|.|||||
RBAM_033860__ 445 TTTTATGTCATGAAGCAGACTCATTTTTCCATGAATCACGGGATTCAGGC 494
BSNT_05601___ 498 GCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAAT 547
||||||.|||||||.|...||||||||.||.|||||..|.||||||||||
RBAM_033860__ 495 GCTGGATACGTATATGAAACACGATTTCTACAGAGTGCGGAGAATTCAAT 544
BSNT_05601___ 548 GCCATTTCGTCATATCAGGAAACTACATAGACTACAGAAATTATGAAAAA 597
|||||||||||||.||||||||||||||.||||.||.|||.||.||.|||
RBAM_033860__ 545 GCCATTTCGTCATCTCAGGAAACTACATCGACTGCAAAAACTACGACAAA 594
BSNT_05601___ 598 GCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGGAAGGACA 647
||||||||.||||||||.||.||....||||||.||||..|.||||||||
RBAM_033860__ 595 GCGCTTGAGCATTTAGACGAAGCCCTCCGCCTTTCTTTGCTTGAAGGACA 644
BSNT_05601___ 648 GCCCCGTTTGATCGGATCAGCCCTTTATAATATCGGGAATTGCTATGATG 697
||||||..|||||||.||..|.|||||.|||.|.||||||||.|||..||
RBAM_033860__ 645 GCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGGAATTGTTATTCTG 694
BSNT_05601___ 698 ACAAGGGGGAGCTGGATCAGGCCGCCGAATACTTTGAAAAAGCGCTTACT 747
|.|||.|.||.||||||.|.||.|||...||||||..|||||||.||.|.
RBAM_033860__ 695 AAAAGCGCGATCTGGATGAAGCGGCCCGGTACTTTAGAAAAGCGGTTCCC 744
BSNT_05601___ 748 GTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCT 797
||.||.||.||..|||||||.|||||||||||.||.|||||.||||||.|
RBAM_033860__ 745 GTTTTTGAAGAGCATCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGCTT 794
BSNT_05601___ 798 GACTCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATGCGGTAC- 846
.||.|.|...|||||||.....||.|||..|.||||.|| |..|||
RBAM_033860__ 795 AACGCACACCCTTTTCAGGCTTCATGATGACCAAGCGGC----CCTTACC 840
BSNT_05601___ 847 ---TATGAAAAAGGGAT--TGCCATTGCCCAAAAACGAAACGACTTC--T 889
|||||||.||||.| || ||.||..||.||||...||| || |
RBAM_033860__ 841 TATTATGAAAGAGGGGTCATG--ATCGCGAAAGAACGGGGCGA--TCGAT 886
BSNT_05601___ 890 TCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTC 939
|||||.|.|..||.|||||.|||.|.||.||..|.|||.||||.||..||
RBAM_033860__ 887 TCAGTTTAGAGAAGTATAAGTTTTTACAAGCGCTTTATTTGGAGTCACTC 936
BSNT_05601___ 940 AATTTGGATATGATTCAAGAAGTATTTGATTATATGGAAGAAAAGGGCCT 989
|||.|||||.|.||.||.|||||.|||||.||||||.|.|||||....||
RBAM_033860__ 937 AATATGGATTTAATCCATGAAGTGTTTGACTATATGAATGAAAAATCGCT 986
BSNT_05601___ 990 GTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTC 1039
||||||.|||||||||||.||.||.||.||.||.|||..||| || |
RBAM_033860__ 987 GTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCGTTTA---CA--C 1031
BSNT_05601___ 1040 A-----TCACGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGG 1084
| .||.||.||||||||||||||||.|||||||||||||||||||.
RBAM_033860__ 1032 AAGCGCACATGAGCAATATAAAGAAGCGGCGTATTTTTATGAAAAAGCGA 1081
BSNT_05601___ 1085 TCAGCATGAGAGAGATGATTC-AAAGGAACGATTGTTTATATGAAGTATG 1133
|..||||||||||.|..|||| |||.|||| |.||||||||.||..|||.
RBAM_033860__ 1082 TTCGCATGAGAGAAAACATTCAAAAAGAAC-AGTGTTTATACGATATATA 1130
BSNT_05601___ 1134 A 1134
|
RBAM_033860__ 1131 A 1131
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