Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05600 and RBAM_033850
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:05
# Commandline: needle
# -asequence dna-align/BSNT_05600.1.9828.seq
# -bsequence dna-align/RBAM_033850___ywmF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05600-RBAM_033850___ywmF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05600-RBAM_033850___ywmF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05600
# 2: RBAM_033850___ywmF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 655
# Identity: 354/655 (54.0%)
# Similarity: 354/655 (54.0%)
# Gaps: 191/655 (29.2%)
# Score: 1133.5
#
#
#=======================================
BSNT_05600 1 ATGAGACAAAACCATCTGCTGGCAGATGGTTTTTTTATATGCAAAAAAAG 50
RBAM_033850__ 0 -------------------------------------------------- 0
BSNT_05600 51 GGGAGCATCGGAACGTTTATTTCCGGGGAGAACAGGAAAAATCGCTACAG 100
RBAM_033850__ 0 -------------------------------------------------- 0
BSNT_05600 101 CACTGTTTTTTGAACAAAAGCCGTTTTGGGATGCAGATCTGCACGTGAGG 150
RBAM_033850__ 0 -------------------------------------------------- 0
BSNT_05600 151 GGGAATTCAATGTTTGGTTTTAATGATATGGTGAAGTTTCTGTG-GTCTT 199
.||||.||.||.|||||||||.|.|||||| |.|| .||.|
RBAM_033850__ 1 ---------TTGTTCGGATTCAATGATATGATAAAGTTT-TTTGTATCAT 40
BSNT_05600 200 TCCTCATTGTTCTGCCGCT--TGTACAGATTATACATGTTTCAGGGCACA 247
|.|||||..||||||||.| ||| |.| |.||.|||||..|.||.||||
RBAM_033850__ 41 TTCTCATCATTCTGCCGATGGTGT-CTG-TCATCCATGTGGCGGGACACA 88
BSNT_05600 248 GCTTTATGGCTTTTATTTTTGGCGGAAAAGGATCGTTGGATATAGGCATG 297
||||||||||..|..|.||.||.||.||.|.|||.||||||||.||.|||
RBAM_033850__ 89 GCTTTATGGCCATGCTGTTCGGAGGCAAGGCATCATTGGATATCGGAATG 138
BSNT_05600 298 GGAAAAACG-CTGCTTAAAA-TTGGACCCATAC-GGTTCAGAACG-ATTT 343
|| .||||| || .|||||| |.||.||.||.| |||||.| || ||.|
RBAM_033850__ 139 GG-GAAACGTCT-TTTAAAAGTAGGGCCGATTCAGGTTCGG--CGTATCT 184
BSNT_05600 344 ATTTTATCGATTCTTTTTGCCGGTATGGGGAGTTGAAAATTGACAATCGA 393
|.||.||.||||||||.|||..||..||.||.|||...||.||.||.||
RBAM_033850__ 185 ACTTCATAGATTCTTTCTGCAAGTTCGGCGAATTGCGGATAGATAACCG- 233
BSNT_05600 394 TTCTCAC--ATGCACTCGTGTATGCAGGGGGCTGCTTGTTTAACCTC--- 438
|||.|| ..||.|||||.|||.|.||.|||||..|||||||.|||
RBAM_033850__ 234 -TCTGACGAGCGCGCTCGTCTATTCCGGAGGCTGTCTGTTTAATCTCGCT 282
BSNT_05600 439 ---ATCACGATTTTTGCAATCAATCTGCTGATTATACACAG-TGTATTAA 484
||| ||||| |||.|||||||||||.||| |.|| |||..|..
RBAM_033850__ 283 TCTATC----TTTTT--AATAAATCTGCTGATCATA-AAAGATGTCCTCG 325
BSNT_05600 485 AGCCGAATGTGTTTTTTTATCAGTTTGTCTATTTTTCTACGTATTATGTG 534
||||.||..|.||||||||.||.||||||||||||||.||.||||||||.
RBAM_033850__ 326 AGCCAAACTTATTTTTTTACCAATTTGTCTATTTTTCAACTTATTATGTT 375
BSNT_05600 535 TTTTTTGCCCTGCTGCCGGTCCGATATTCGGAGAAAAAGTCATCAGACGG 584
||.||||||||.||||||||.|.|||...|||.||.|||...||||||||
RBAM_033850__ 376 TTCTTTGCCCTTCTGCCGGTGCAATACGGGGATAATAAGCTGTCAGACGG 425
BSNT_05600 585 GCTGGCGATATACAAGGTGCTCCGTTACGGAGAGCGCTACGAAATCGATA 634
..||||..|.|||||.||||||||.|||||.||.||||..||||||.|||
RBAM_033850__ 426 ATTGGCTGTTTACAAAGTGCTCCGCTACGGGGAACGCTGTGAAATCAATA 475
BSNT_05600 635 AATAA 639
|.|.|
RBAM_033850__ 476 ATTGA 480
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