Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05591 and RBAM_033810
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:05
# Commandline: needle
# -asequence dna-align/BSNT_05591___ureC.1.9828.seq
# -bsequence dna-align/RBAM_033810___ureC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05591___ureC-RBAM_033810___ureC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05591___ureC-RBAM_033810___ureC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05591___ureC
# 2: RBAM_033810___ureC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1719
# Identity: 1413/1719 (82.2%)
# Similarity: 1413/1719 (82.2%)
# Gaps: 18/1719 ( 1.0%)
# Score: 5790.0
#
#
#=======================================
BSNT_05591___ 1 ATGAAAATGTCACGGGAGGAATATGCGGAACTGTTTGGCCCGACAACGGG 50
||||||||||||||.|||.||||.||.||||||||.||.|||||||||||
RBAM_033810__ 1 ATGAAAATGTCACGTGAGCAATACGCAGAACTGTTCGGACCGACAACGGG 50
BSNT_05591___ 51 CGATAAAATCAGATTGGGCGACACGGATTTATGGATCGAAGTCGAAAAGG 100
.||.|||.|||||.|.||.||.||||||||||||||.|||||||||||.|
RBAM_033810__ 51 AGACAAAGTCAGACTCGGAGATACGGATTTATGGATTGAAGTCGAAAAAG 100
BSNT_05591___ 101 ATTTCACAGTA-TACGGTGAAGAAATGATCTTTGGCGGCGGAAAAACAAT 149
||||||| |.| |||||||||||||||||.||.|||||.||.||||||||
RBAM_033810__ 101 ATTTCAC-GAATTACGGTGAAGAAATGATTTTCGGCGGAGGGAAAACAAT 149
BSNT_05591___ 150 CCGCGACGGCATGGGCCAAAACGGCAGAATCACAGGGAAGGACG--GCGC 197
|||.|||||||||||.||.|||||..|.|||||.|||||.|||| ||||
RBAM_033810__ 150 CCGGGACGGCATGGGGCAGAACGGGCGTATCACCGGGAAAGACGGAGCGC 199
BSNT_05591___ 198 TTTGGATTTAGTTATCACCAACGTCGTGCTAT--TGGATTACACAGGCAT 245
|| |||.|.||.||.||.||||.||| ||| |||||||.||.||.||
RBAM_033810__ 200 TT--GATCTGGTCATTACAAACGCCGT--TATCCTGGATTATACCGGAAT 245
BSNT_05591___ 246 TGTCAAAGCGGATGTCGGTGTGAAAGACGGCCGGATTGTCGGTGTCGGAA 295
.|||||.||||||.||||.|||||.|||||||||||||||||.|||||||
RBAM_033810__ 246 CGTCAAGGCGGATATCGGGGTGAAGGACGGCCGGATTGTCGGCGTCGGAA 295
BSNT_05591___ 296 AAAGCGGAAATCCTGATATCATGGATGGAGTCGATCCGCACATGGTCATC 345
|||||||.||||||||||||||||||||.||.||.|||.|||||.|.|||
RBAM_033810__ 296 AAAGCGGCAATCCTGATATCATGGATGGGGTGGACCCGTACATGATTATC 345
BSNT_05591___ 346 GGAGCGGGGACAGAGGTGATTTCCGGTGAAGGCAAAATTTTAACAGCCGG 395
||.||.||.|||||.||.||||||||.|||||.|||||..||||.|||||
RBAM_033810__ 346 GGTGCCGGAACAGAAGTCATTTCCGGCGAAGGGAAAATCGTAACGGCCGG 395
BSNT_05591___ 396 GGGAGTGGACACGCACATTCATTTTATTTGTCCTCAGCAGATGGAAGTTG 445
.||.|||||.|||||.||.||.|||||.||.||.||||||||||||||.|
RBAM_033810__ 396 CGGGGTGGATACGCATATCCACTTTATCTGCCCGCAGCAGATGGAAGTCG 445
BSNT_05591___ 446 CGCTTTCTTCGGGTGTGACAACCCTTTTGGGAGGCGGAACAGGACCCGCA 495
||||||||||.||.|||||.||.|||.|.||.||||||||.||.||.||.
RBAM_033810__ 446 CGCTTTCTTCAGGCGTGACCACGCTTCTCGGCGGCGGAACGGGTCCTGCG 495
BSNT_05591___ 496 ACAGGCAGCAAAGCGACAACATGTACATCCGGCGCGTGGTATATGGCAAG 545
||.||.||.||||||||.||.|||||||||||.||.|||||.|||.|.||
RBAM_033810__ 496 ACGGGAAGTAAAGCGACGACTTGTACATCCGGTGCATGGTACATGTCGAG 545
BSNT_05591___ 546 GATGCTGGAAGCGGCCGAGGAGTTTCCGATCAATGTCGGCTTCTTAGGAA 595
.||||||||||||||||||||||||||||||||.|||||.||||||||||
RBAM_033810__ 546 AATGCTGGAAGCGGCCGAGGAGTTTCCGATCAACGTCGGTTTCTTAGGAA 595
BSNT_05591___ 596 AAGGGAATGCATCCGATAAAGCGCCGCTGATCGAGCAGGTGGAAGCAGGC 645
||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_033810__ 596 AAGGGAATGCATCCGATAAAGCGCCGCTGATCGAGCAGGTGGAAGCAGGC 645
BSNT_05591___ 646 GCCATCGGCCTTAAGCTTCATGAAGACTGGGGCACGACGCCAAGCGCCAT 695
||.||||||||.|||||.||||||||.|||||..|.||||||||||||||
RBAM_033810__ 646 GCGATCGGCCTGAAGCTGCATGAAGATTGGGGATCAACGCCAAGCGCCAT 695
BSNT_05591___ 696 TAAAACGTGTATGGAAGTCGTGGACGAGGCTGATATTCAAGTTGCCATCC 745
||||.|.||.|||||||..|.|||.|||||.||.|||||.||.||.||||
RBAM_033810__ 696 TAAAGCTTGCATGGAAGCAGCGGATGAGGCGGACATTCAGGTGGCGATCC 745
BSNT_05591___ 746 ATACCGATACGCTTAACGAAGCGGGCTTTTTGGAAAACACGCTCGACGCG 795
|.||.||.|||.|.||.||||||||||||||.|||||.|||||.||.|||
RBAM_033810__ 746 ACACAGACACGATAAATGAAGCGGGCTTTTTAGAAAATACGCTTGATGCG 795
BSNT_05591___ 796 ATCGGGGACCGGGTCATTCATACTTATCACATTGAAGGTGCAGGCGGCGG 845
|||||.||||||||.||||||||.||||||||.||.||.||.|||||.||
RBAM_033810__ 796 ATCGGCGACCGGGTTATTCATACATATCACATAGAGGGAGCCGGCGGAGG 845
BSNT_05591___ 846 CCATGCCCCGGATATTATGAAGCTCGCTTCTTACGCGAACATTCTGCCGT 895
|||.||.||||||||||||||.|||||.||||||||.||.||.|||||||
RBAM_033810__ 846 CCACGCACCGGATATTATGAAACTCGCATCTTACGCCAATATCCTGCCGT 895
BSNT_05591___ 896 CATCTACAACGCCAACCATTCCTTATACCGTTAATACGATGGATGAGCAT 945
|.|||||.|||||.||.||.||.||||||||.||.||||||||.||||||
RBAM_033810__ 896 CCTCTACGACGCCGACGATCCCGTATACCGTCAACACGATGGACGAGCAT 945
BSNT_05591___ 946 CTTGACATGATGATGGTCTGCCACCATTTAGATGCGAAAGTGCCTGAAGA 995
|||||.|||||||||||||||||.|||||||||.|.||||||||||||||
RBAM_033810__ 946 CTTGATATGATGATGGTCTGCCATCATTTAGATTCAAAAGTGCCTGAAGA 995
BSNT_05591___ 996 TGTGGCGTTCAGCCATTCCAGAATCAGGGCTGCGACGATTGCCGCGGAGG 1045
.|||||||||||.|||||..|.|||||.||.||.||.|||||.|||||||
RBAM_033810__ 996 CGTGGCGTTCAGTCATTCACGCATCAGAGCGGCCACCATTGCGGCGGAGG 1045
BSNT_05591___ 1046 ATATTCTCCATGATATCGGTGCGATCAGCATGACATCATCGGATTCCCAA 1095
|||||||.||.||||||||.||||||||||||||.|||||.||.||.||.
RBAM_033810__ 1046 ATATTCTGCACGATATCGGCGCGATCAGCATGACGTCATCTGACTCGCAG 1095
BSNT_05591___ 1096 GCGATGGGGCGGGTCGGTGAAGTGATCATCCGAACATGGCAGGTAGCCGA 1145
||||||||..||||.||.||||||||.|||||.|||||||||||.|||||
RBAM_033810__ 1096 GCGATGGGCAGGGTGGGGGAAGTGATTATCCGGACATGGCAGGTGGCCGA 1145
BSNT_05591___ 1146 TAAAATGAAAAAACAGCGCGGCGCTCTTGCCGGCGAAAACGGAAATGACA 1195
|||||||||||||||||||||||||||..|.||.||||||||.|||||||
RBAM_033810__ 1146 TAAAATGAAAAAACAGCGCGGCGCTCTATCAGGAGAAAACGGCAATGACA 1195
BSNT_05591___ 1196 ATGTGCGCGCAAAACGGTACATTGCCAAATACACGATTAATCCGGCAATT 1245
||||||||||.|||||.||.||.||||||||||||||.||.|||||..|.
RBAM_033810__ 1196 ATGTGCGCGCCAAACGCTATATCGCCAAATACACGATCAACCCGGCCGTC 1245
BSNT_05591___ 1246 ACGCACGGGCTCAGCCATGAAGTCGGCTCGGTGGAAAAAGGGAAGCTTGC 1295
||.|||||.||.||||||||||||||.||.||.||||||||.|||||.||
RBAM_033810__ 1246 ACTCACGGCCTGAGCCATGAAGTCGGTTCCGTTGAAAAAGGAAAGCTCGC 1295
BSNT_05591___ 1296 TGATCTCGTTCTGTGGGACCCGGTATTTTTCGGCGTAAAACCGGAACTGG 1345
.||.||.||.||.|||||||||||.||.||||||||.|||||.|||||.|
RBAM_033810__ 1296 CGACCTTGTACTATGGGACCCGGTTTTCTTCGGCGTCAAACCTGAACTTG 1345
BSNT_05591___ 1346 T-CTTAAAGGGCGGCATGATTGCACGTGCGCAAATGGGAGATCCGAACGC 1394
| ||.||| |||||||||||.||.||.||.||.||||||||||||||.||
RBAM_033810__ 1346 TGCTCAAA-GGCGGCATGATCGCCCGCGCCCAGATGGGAGATCCGAATGC 1394
BSNT_05591___ 1395 GTCCATCCCGACTCCTGAACCGGTTTTCATGCGCCAAATGTATGCGTCTT 1444
.|||||.|||||.|||||.||.||.||.|||||.||.|||||.||.||.|
RBAM_033810__ 1395 TTCCATTCCGACGCCTGAGCCCGTGTTTATGCGGCAGATGTACGCATCAT 1444
BSNT_05591___ 1445 ACGGAAAAGCCAACCGCTCAACCTCGATTACATTTATGTCTCAGGCAAGC 1494
||||.|||||.|||||....|||||.||||||||||||||.|||||..|.
RBAM_033810__ 1445 ACGGTAAAGCAAACCGAAATACCTCTATTACATTTATGTCCCAGGCCGGT 1494
BSNT_05591___ 1495 ATAG--AGCGTGGTGTGGCGG-AAAGCTTAGGGCTGGAAAAAAGGATTTC 1541
||.| |.| ||||||.||| ||||| |.||.||.|||||||.||||||
RBAM_033810__ 1495 ATCGCAAAC--GGTGTGCCGGAAAAGC-TCGGCCTTGAAAAAATGATTTC 1541
BSNT_05591___ 1542 TCCAGTCAAAAATATCAGAAAGCTGAGCAAGCTGGATATGAAGCTGAATT 1591
|||.||....||||||.|.||||||||.|||||.||.||||||||||||.
RBAM_033810__ 1542 TCCCGTACGGAATATCCGTAAGCTGAGTAAGCTCGACATGAAGCTGAATG 1591
BSNT_05591___ 1592 CGGCTTTGCCGAAGATTGAGATTGATCCAAAAACCTATCAGGTCTTTGCT 1641
..||..|||||||.||..|..|.|||||.||||||||||||||.||.||.
RBAM_033810__ 1592 ACGCGATGCCGAATATACAAGTCGATCCGAAAACCTATCAGGTGTTCGCC 1641
BSNT_05591___ 1642 GACGGGGAGGAATTGTCTTGCCAGCCTGTCGATTATGTCCCCCTTGGACA 1691
|||||.||.||..||.|.||||||||.|||...|||||.||.||.|||||
RBAM_033810__ 1642 GACGGAGAAGAGCTGGCATGCCAGCCCGTCAGCTATGTTCCGCTCGGACA 1691
BSNT_05591___ 1692 AAGATATTTCTTATTCTGA 1710
..|.|||||||||||.|.|
RBAM_033810__ 1692 GCGTTATTTCTTATTTTAA 1710
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