Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05590 and RBAM_033800
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:05
# Commandline: needle
# -asequence dna-align/BSNT_05590___ywnA.1.9828.seq
# -bsequence dna-align/RBAM_033800___ywnA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05590___ywnA-RBAM_033800___ywnA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05590___ywnA-RBAM_033800___ywnA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05590___ywnA
# 2: RBAM_033800___ywnA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 405
# Identity: 311/405 (76.8%)
# Similarity: 311/405 (76.8%)
# Gaps: 3/405 ( 0.7%)
# Score: 1180.0
#
#
#=======================================
BSNT_05590___ 1 ATGATTAACAGCCGTCTTGCTGTTGCCATTCATATTTTATCCCTCATCTC 50
|||||||||||||||||||||||.||||||||.|||.||||.||.|||||
RBAM_033800__ 1 ATGATTAACAGCCGTCTTGCTGTGGCCATTCACATTCTATCGCTGATCTC 50
BSNT_05590___ 51 GATGGATGAAAAAACATCTTCAGAAATCATTGCAGACAGTGTCAACACGA 100
.|.|||||||....|.||.||.||.||.|||||.|.|||.||.|||||.|
RBAM_033800__ 51 AACGGATGAACGGGCGTCATCGGACATGATTGCGGGCAGCGTAAACACCA 100
BSNT_05590___ 101 ATCCGGTAGTTGTGCGAAGAATGATCAGCCTGCTGAAAAAAGCTGATATT 150
||||.||.||.|||||.||||.||||||||.||||||||||||.|.||||
RBAM_033800__ 101 ATCCCGTCGTCGTGCGGAGAACGATCAGCCAGCTGAAAAAAGCGGGTATT 150
BSNT_05590___ 151 CTCACATCACGCGCCGGGGTGCCGGGTGCAAGCCTCAAAAAAGATCCTGC 200
||.||.||.||.||.||.||.|||||.||.|||||.|||||||||||..|
RBAM_033800__ 151 CTGACTTCCCGGGCGGGTGTTCCGGGAGCCAGCCTGAAAAAAGATCCGTC 200
BSNT_05590___ 201 TGATATTTCTCTTTTAGAAGTGTACCGGGCTGTCCAAAAGCAAGAAGAAC 250
.||.||..|.||.|||||.||.|||.||||.||.||.||....|||||.|
RBAM_033800__ 201 GGAGATCACCCTCTTAGAGGTTTACAGGGCGGTGCAGAATAGGGAAGAGC 250
BSNT_05590___ 251 TCTTTGCGGTTCATGAAAACCCGAATCCGAAATGTCCGGTAGGGAAAAAA 300
|.|||||||||||.||.||.|||||.||..|.||||||||.||.|||||.
RBAM_033800__ 251 TTTTTGCGGTTCACGACAATCCGAACCCCGACTGTCCGGTCGGCAAAAAT 300
BSNT_05590___ 301 ATTCAGAACGCTCTGGATGAAACGTTTGAAAGTGTGCAAAGAGCGATGGA 350
||||||..|||.||.|||||.|||||.|.|||.||.||..|.||.|||||
RBAM_033800__ 301 ATTCAGCGCGCGCTCGATGAGACGTTCGGAAGCGTACAGCGGGCAATGGA 350
BSNT_05590___ 351 AAATGAACTGGCAAGCAAGTCATTAAAAGATGTTATGAATCATCTCTT-- 398
.||||||||.||.||||||||..|..|.|||||.||||||||||||||
RBAM_033800__ 351 GAATGAACTTGCGAGCAAGTCCCTTTATGATGTAATGAATCATCTCTTTT 400
BSNT_05590___ 399 -TTAA 402
||||
RBAM_033800__ 401 GTTAA 405
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