Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05590 and RBAM_033800

See Amino acid alignment / Visit BSNT_05590 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:05
# Commandline: needle
#    -asequence dna-align/BSNT_05590___ywnA.1.9828.seq
#    -bsequence dna-align/RBAM_033800___ywnA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05590___ywnA-RBAM_033800___ywnA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05590___ywnA-RBAM_033800___ywnA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05590___ywnA
# 2: RBAM_033800___ywnA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 405
# Identity:     311/405 (76.8%)
# Similarity:   311/405 (76.8%)
# Gaps:           3/405 ( 0.7%)
# Score: 1180.0
# 
#
#=======================================

BSNT_05590___      1 ATGATTAACAGCCGTCTTGCTGTTGCCATTCATATTTTATCCCTCATCTC     50
                     |||||||||||||||||||||||.||||||||.|||.||||.||.|||||
RBAM_033800__      1 ATGATTAACAGCCGTCTTGCTGTGGCCATTCACATTCTATCGCTGATCTC     50

BSNT_05590___     51 GATGGATGAAAAAACATCTTCAGAAATCATTGCAGACAGTGTCAACACGA    100
                     .|.|||||||....|.||.||.||.||.|||||.|.|||.||.|||||.|
RBAM_033800__     51 AACGGATGAACGGGCGTCATCGGACATGATTGCGGGCAGCGTAAACACCA    100

BSNT_05590___    101 ATCCGGTAGTTGTGCGAAGAATGATCAGCCTGCTGAAAAAAGCTGATATT    150
                     ||||.||.||.|||||.||||.||||||||.||||||||||||.|.||||
RBAM_033800__    101 ATCCCGTCGTCGTGCGGAGAACGATCAGCCAGCTGAAAAAAGCGGGTATT    150

BSNT_05590___    151 CTCACATCACGCGCCGGGGTGCCGGGTGCAAGCCTCAAAAAAGATCCTGC    200
                     ||.||.||.||.||.||.||.|||||.||.|||||.|||||||||||..|
RBAM_033800__    151 CTGACTTCCCGGGCGGGTGTTCCGGGAGCCAGCCTGAAAAAAGATCCGTC    200

BSNT_05590___    201 TGATATTTCTCTTTTAGAAGTGTACCGGGCTGTCCAAAAGCAAGAAGAAC    250
                     .||.||..|.||.|||||.||.|||.||||.||.||.||....|||||.|
RBAM_033800__    201 GGAGATCACCCTCTTAGAGGTTTACAGGGCGGTGCAGAATAGGGAAGAGC    250

BSNT_05590___    251 TCTTTGCGGTTCATGAAAACCCGAATCCGAAATGTCCGGTAGGGAAAAAA    300
                     |.|||||||||||.||.||.|||||.||..|.||||||||.||.|||||.
RBAM_033800__    251 TTTTTGCGGTTCACGACAATCCGAACCCCGACTGTCCGGTCGGCAAAAAT    300

BSNT_05590___    301 ATTCAGAACGCTCTGGATGAAACGTTTGAAAGTGTGCAAAGAGCGATGGA    350
                     ||||||..|||.||.|||||.|||||.|.|||.||.||..|.||.|||||
RBAM_033800__    301 ATTCAGCGCGCGCTCGATGAGACGTTCGGAAGCGTACAGCGGGCAATGGA    350

BSNT_05590___    351 AAATGAACTGGCAAGCAAGTCATTAAAAGATGTTATGAATCATCTCTT--    398
                     .||||||||.||.||||||||..|..|.|||||.||||||||||||||  
RBAM_033800__    351 GAATGAACTTGCGAGCAAGTCCCTTTATGATGTAATGAATCATCTCTTTT    400

BSNT_05590___    399 -TTAA    402
                      ||||
RBAM_033800__    401 GTTAA    405


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