Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05585 and RBAM_033770
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:04
# Commandline: needle
# -asequence dna-align/BSNT_05585___ywnE.1.9828.seq
# -bsequence dna-align/RBAM_033770___ywnE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05585___ywnE-RBAM_033770___ywnE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05585___ywnE-RBAM_033770___ywnE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05585___ywnE
# 2: RBAM_033770___ywnE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1459
# Identity: 1143/1459 (78.3%)
# Similarity: 1143/1459 (78.3%)
# Gaps: 20/1459 ( 1.4%)
# Score: 4388.0
#
#
#=======================================
BSNT_05585___ 1 GTGAGTATTTCTTCCATCCTTTTAT---CACTTTTTTTCATTTTAAATAT 47
|||||.|||||.| |..|||||| .|.||||||||.||||||||||
RBAM_033770__ 1 GTGAGCATTTCAT---TTATTTTATTCGGATTTTTTTTCGTTTTAAATAT 47
BSNT_05585___ 48 TCTTTTGGCCATCATTGTCATCTTCAAAGAACGGCGCGATGCCAGTGCAT 97
.|||||||||.||||..|.||.|||||||||.|.|||||||||||.||.|
RBAM_033770__ 48 ACTTTTGGCCGTCATCATGATTTTCAAAGAAAGACGCGATGCCAGCGCTT 97
BSNT_05585___ 98 CTTGGGCGTGGCTGCTT-GTTCTTTTCTTTATTCCCGTTTTAGGCTTTAT 146
|.|||||.||||| ||| ||||||||.|||||||||.|||||||.|||||
RBAM_033770__ 98 CATGGGCTTGGCT-CTTGGTTCTTTTTTTTATTCCCATTTTAGGGTTTAT 146
BSNT_05585___ 147 TTTATACTTATTATTCGGCCATAATCTCAGACACAAGCATTTGTTTCAAT 196
|||||||.|.||||||||||||||.||.||||.|||||||.|||||||||
RBAM_033770__ 147 TTTATACCTGTTATTCGGCCATAACCTGAGACGCAAGCATCTGTTTCAAT 196
BSNT_05585___ 197 GGGAAGACCGGAAAAAGATTGGAATTGAAAGGCTGCTGAAGCATCAGCTT 246
||||||||||.|||||.||.||.|||||||.||||||||||..||||| |
RBAM_033770__ 197 GGGAAGACCGTAAAAAAATCGGGATTGAAAAGCTGCTGAAGTCTCAGC-T 245
BSNT_05585___ 247 GAA-GATTTAGAA-ACCAAGCAATTTCAGTTCAATAACCGGGCAACCTTT 294
||| |||.| ||| .|.|.||||||.||.||.||.|||.|.||.||..|.
RBAM_033770__ 246 GAAGGATCT-GAAGTCGAGGCAATTCCAATTTAACAACAGAGCGACTGTG 294
BSNT_05585___ 295 GATAACAAAGATTTAATTTATATGCTGATTATGAATAACCATGCTGTGTT 344
|||||.|||||..|.||.||||||||..|.|||||.|||||.||.||.||
RBAM_033770__ 295 GATAATAAAGACCTCATCTATATGCTTGTCATGAACAACCACGCAGTCTT 344
BSNT_05585___ 345 TACAGAGGATAATTCAGTTGACGTCATTACAGATGGACGGGATAAATTTC 394
|||||||||||||||.||.||..|..|.||.||.||.||.|||||.||..
RBAM_033770__ 345 TACAGAGGATAATTCGGTGGAGATTTTGACGGACGGGCGCGATAAGTTCA 394
BSNT_05585___ 395 AGCGGCTGCTGAGTGACATTTCAAAGGCTAAGGATCATATCCATTTACAG 444
|.||..|..|||..||||||||.||.||.||.|||||.||.||..|.||.
RBAM_033770__ 395 AACGCTTAATGAAGGACATTTCCAACGCAAAAGATCACATTCACCTTCAA 444
BSNT_05585___ 445 TATTATATTTATAAAGGCGATGAATTAGGCAAAAAATTGCGGGACGCTCT 494
||.||||||||||||||.||||||.|.||.|||||||||||.||.|| ||
RBAM_033770__ 445 TACTATATTTATAAAGGTGATGAACTGGGAAAAAAATTGCGCGATGC-CT 493
BSNT_05585___ 495 CA-TCCAAAAGGCGAAAGAAGGTGTTCAGGTCAGAGTGCTTTATGATGAA 543
.| |..||||.||....|||||.||..|.|||||||||.|.|||||||||
RBAM_033770__ 494 TAGTGAAAAAAGCACGCGAAGGCGTAAAAGTCAGAGTGTTATATGATGAA 543
BSNT_05585___ 544 CTCGGGTCCAGAACGCTGAGAAAAAAGTTTTTTAAAGAGCTTCGCGAGGC 593
|||||.||.|||.|.||.||||||||.||.||.|||..|||.||.||.||
RBAM_033770__ 544 CTCGGTTCAAGATCACTCAGAAAAAAATTCTTCAAACCGCTGCGGGACGC 593
BSNT_05585___ 594 TGGCGGGCATGTGGAGGTCTTTTTCCCTTCAAAGCTCAGGCCGATTAACC 643
.|||||.||||||||.||||||||.|||||.|.|||..|.||||||||..
RBAM_033770__ 594 CGGCGGCCATGTGGAAGTCTTTTTTCCTTCCAGGCTTCGTCCGATTAATT 643
BSNT_05585___ 644 TGCGGCTGAATTACCGGAACCATCGAAAGCTTGTGATCATAGACG--GAA 691
|||||||.|||||.|||||.||.||.|||||.||.|||||.|||| |||
RBAM_033770__ 644 TGCGGCTCAATTATCGGAATCACCGCAAGCTCGTCATCATTGACGGCGAA 693
BSNT_05585___ 692 TGACCGGTTATGTCGGAGGCTTTAACGTCGGAGATGAGTATCTAGGGCTT 741
|||||.||||||||.||||||||||||||||||||.|||||.||.||.
RBAM_033770__ 694 --ACCGGCTATGTCGGCGGCTTTAACGTCGGAGATGAATATCTCGGCCTG 741
BSNT_05585___ 742 AATCCGAAATTCGGTTATTGGCGGGATACGCATATCCGGCTGCAAGGAAC 791
||||||||||||||.||.|||||.||||||||..||.||||.|||||.||
RBAM_033770__ 742 AATCCGAAATTCGGCTACTGGCGCGATACGCACCTCAGGCTTCAAGGCAC 791
BSNT_05585___ 792 GGCCGTGCATGCCATCCAAACACGATTCATCCTTGACTGGAACCAAGCTT 841
|||.||.||.|||||.||.|||||.||.|||||.||.|||||||||||.|
RBAM_033770__ 792 GGCGGTACACGCCATTCAGACACGGTTTATCCTCGATTGGAACCAAGCCT 841
BSNT_05585___ 842 CTCATCACCATACGCTGACATATATTCCAAATCACTTTCCTGATTACGGC 891
|.|||||.||||||||.|||||..||||.|||||.|||||.||.|.||..
RBAM_033770__ 842 CCCATCATCATACGCTCACATACGTTCCGAATCATTTTCCGGAATGCGAG 891
BSNT_05585___ 892 CCAAAAGGCAACGTCGGGATGCAGATTGTCACAAGCGGCCCTGATTCGGA 941
||.||.|||||.||||||||||||||||||||.|||||.||.||.||.||
RBAM_033770__ 892 CCGAAGGGCAATGTCGGGATGCAGATTGTCACGAGCGGACCGGACTCAGA 941
BSNT_05585___ 942 ATGGGAACAAATTAAAAATGGCTACATCAAAATGATTTCGAAC-GCCAAG 990
||||||||||||||||||.|||||.|||||.|||||.|| ||| |||||.
RBAM_033770__ 942 ATGGGAACAAATTAAAAACGGCTATATCAAGATGATCTC-AACGGCCAAA 990
BSNT_05585___ 991 CGTTCCATTTTGATACAAACACCTTATTTTATCCCAGATGCAAGCCTGCT 1040
||.||.||..||||.||.||.|||||.|||||.||.||..||||.||..|
RBAM_033770__ 991 CGGTCAATCCTGATTCAGACGCCTTACTTTATTCCTGACTCAAGTCTTTT 1040
BSNT_05585___ 1041 GGATGCTTTAAGGATCGCTTGCCTTTCGGGCATTGACGTTAACATTATGA 1090
.|||||..|.||||||||.||.||.||.|||||.|||||.||.||.||||
RBAM_033770__ 1041 AGATGCCCTCAGGATCGCCTGTCTGTCAGGCATCGACGTCAAAATCATGA 1090
BSNT_05585___ 1091 TTCCGAACAAGCCTGATCACGCCTTTGTATACTGGGCAACACTTTCGTAT 1140
|||||||||||||.||||||||.||.||.||||||||.||..|.||.||.
RBAM_033770__ 1091 TTCCGAACAAGCCGGATCACGCTTTCGTTTACTGGGCGACTTTATCTTAC 1140
BSNT_05585___ 1141 ATCGGCGATCTGCTGAAAGCCGGAGCCACTGTCTATATTTACGATAACGG 1190
|||||||||||..||||||||||||||.|.|||||.||||||||||||||
RBAM_033770__ 1141 ATCGGCGATCTTTTGAAAGCCGGAGCCTCAGTCTACATTTACGATAACGG 1190
BSNT_05585___ 1191 CTTTATTCACGCGAAAACCATCGTGGTGGATGACGAAATCGCTTCAGTCG 1240
|||||||||.||.|||||.||.||.||.|||||.||.|..||||||||||
RBAM_033770__ 1191 CTTTATTCATGCAAAAACGATTGTCGTCGATGATGAGACGGCTTCAGTCG 1240
BSNT_05585___ 1241 GCACAGCGAACATTGATGTCCGAAGCTTCAGGCTGAATTTTGAGGTTAAT 1290
|.||.|||||.||.||.|||.||||||||||.||.||||||||.||.||.
RBAM_033770__ 1241 GTACGGCGAATATCGACGTCAGAAGCTTCAGACTTAATTTTGAAGTCAAC 1290
BSNT_05585___ 1291 GCATTTATTTACGATATCACTATTGCTAAAAAACTGGTTTCAACTTTTAA 1340
||.||||||||.||..||||.|||||.||||||||..||||..|.|||||
RBAM_033770__ 1291 GCCTTTATTTATGACGTCACCATTGCGAAAAAACTCATTTCCTCATTTAA 1340
BSNT_05585___ 1341 AGAAGATTTGCTAGTATCCAGAAAATTCACCTATGAGGAGTATTTGCAGC 1390
|||||||.||||.||.||||||||||..||.|||||.||.|||..|.|||
RBAM_033770__ 1341 AGAAGATCTGCTCGTCTCCAGAAAATATACGTATGAAGAATATCAGGAGC 1390
BSNT_05585___ 1391 GCCCGTTGTGGATTCGAATAAAAGAATCCGTCTCGCGGCTGTTGTCGCCG 1440
|..||.|||||||.||.||.||||||||..|.||..|.||..|.||||||
RBAM_033770__ 1391 GTTCGCTGTGGATCCGCATTAAAGAATCGATTTCAAGACTTCTTTCGCCG 1440
BSNT_05585___ 1441 ATCTTATAA 1449
||.||.|||
RBAM_033770__ 1441 ATTTTGTAA 1449
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