Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05584 and RBAM_033760
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:04
# Commandline: needle
# -asequence dna-align/BSNT_05584___ywnF.1.9828.seq
# -bsequence dna-align/RBAM_033760___ywnF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05584___ywnF-RBAM_033760___ywnF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05584___ywnF-RBAM_033760___ywnF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05584___ywnF
# 2: RBAM_033760___ywnF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 454
# Identity: 321/454 (70.7%)
# Similarity: 321/454 (70.7%)
# Gaps: 32/454 ( 7.0%)
# Score: 1072.5
#
#
#=======================================
BSNT_05584___ 1 ATGAA-CTTTTACAGAGTC-----GAACAAATGCCGGGGTTCATCAAAAC 44
||||| || .||| | ||||||.|||||||.|||||.||||.
RBAM_033760__ 1 ATGAAGCT-----GGAG-CATGCGGAACAATTGCCGGGATTCATAAAAAA 44
BSNT_05584___ 45 AGAAATGCAAAAAATTCAAAAGGCCGTACAGCCTTTCATGAAAAAAACCG 94
||||||.||.|||||.||||..|||.|...|||..|.||||||||||.|.
RBAM_033760__ 45 AGAAATTCAGAAAATACAAATCGCCATCGCGCCGCTGATGAAAAAAAGCA 94
BSNT_05584___ 95 TCATTTACCGTTTTCTTGCTATTCCGCTTGCTGCATTCTCTCTCTTTAAT 144
||||||||||||||||||||.|.|||||.||.||.||...|||.|||.||
RBAM_033760__ 95 TCATTTACCGTTTTCTTGCTTTCCCGCTCGCCGCTTTTAGTCTGTTTCAT 144
BSNT_05584___ 145 TTAGCTGCTTTTTTATTTCATG---CTTCAGCTGACAGGGAG-TCCCTGA 190
.|.||..|..||||..||||.| ||||.| .||.| |||| ||.|..|
RBAM_033760__ 145 CTGGCATCGCTTTTGATTCAGGCCCCTTCCG-GGAGA-GGAGCTCTCGTA 192
BSNT_05584___ 191 TCAGCGCAGGCATATTCGCCCTTTTGGCGGCGCTCGGGCTCGCATTTTTT 240
|| .||.|||||.||.|||||..|.|||||.||.||.||.||.||||||
RBAM_033760__ 193 TC--GGCCGGCATTTTTGCCCTCCTTGCGGCTCTGGGTCTTGCGTTTTTT 240
BSNT_05584___ 241 AAAGAGGCAGGCTATCAGCATAAACAAATCCAAAAAACGGTTCACATCTA 290
||.||.||.||||||||||..|||||..|.|||||||||.|.|.|.|.||
RBAM_033760__ 241 AAGGAAGCCGGCTATCAGCGGAAACAGGTGCAAAAAACGATCCGCCTTTA 290
BSNT_05584___ 291 TATGCTGAACAGGATCAAAAAGAGCGAAATCCTTTCAGAAGAGCGGAAAA 340
||||||||||||.||||.|||.|||||.||.||.||.||.||.|||||||
RBAM_033760__ 291 TATGCTGAACAGAATCAGAAAAAGCGATATTCTGTCCGAGGAACGGAAAA 340
BSNT_05584___ 341 GCTCCTACGCACGACAAATAAAGGAAGAGCCTTTTGCGATGCGGAGTTTT 390
||.||||..|.||.|..||....||.|||||.|.|||||||..|||.|||
RBAM_033760__ 341 GCGCCTATACCCGGCTGATTGCCGAGGAGCCGTCTGCGATGAAGAGCTTT 390
BSNT_05584___ 391 GTTGAATTTTTGACTGAGGAAGACAGACGCAAAA---AAATG---TATGA 434
.||||||||||.||.||.|||||| ||.|||| ||||| |||.|
RBAM_033760__ 391 ATTGAATTTTTAACGGAAGAAGAC---CGGAAAAAAGAAATGCTTTATTA 437
BSNT_05584___ 435 ATAA 438
|
RBAM_033760__ 438 A--- 438
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