Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_05577 and RBAM_033710

See Amino acid alignment / Visit BSNT_05577 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:04
# Commandline: needle
#    -asequence dna-align/BSNT_05577___ywoA.1.9828.seq
#    -bsequence dna-align/RBAM_033710___ywoA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05577___ywoA-RBAM_033710___ywoA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05577___ywoA-RBAM_033710___ywoA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05577___ywoA
# 2: RBAM_033710___ywoA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 588
# Identity:     440/588 (74.8%)
# Similarity:   440/588 (74.8%)
# Gaps:          18/588 ( 3.1%)
# Score: 1623.5
# 
#
#=======================================

BSNT_05577___      1 TTGAACTACGAAATTTTTAAAGCAATCCATGGACTATCTCATCACAATTC     50
                     .||||.||||||.|.||||||||.|||.||||..|.||.||.||.|.|.|
RBAM_033710__      1 GTGAATTACGAACTATTTAAAGCGATCAATGGTTTGTCGCACCATAGTGC     50

BSNT_05577___     51 AGTTCTCGATTCCATTATGGTCTTCATAACGGAATATGCCATTATCGCCT    100
                     ..|||||||.||.||.|||||.||.||.||||||||.||||||..|||||
RBAM_033710__     51 CATTCTCGACTCTATCATGGTATTTATTACGGAATACGCCATTTACGCCT    100

BSNT_05577___    101 ATGCCCTTATCCTATTGGCAATCTGGCTGTTTGGGAACACACAAAGCAGA    150
                     |.||||||.||||..|.||.||.||||||||.||.|.||||.||.|||||
RBAM_033710__    101 ACGCCCTTTTCCTGCTTGCCATGTGGCTGTTCGGAAGCACAAAAGGCAGA    150

BSNT_05577___    151 AAACATGTGCTATACGCAGGCATCACAGGAATTGCAGGCCTTGTGATCAA    200
                     .||.|.|..||.|||||.|||.||||.||..||||||..|||.|..||||
RBAM_033710__    151 CAAAACGCCCTGTACGCGGGCTTCACGGGTGTTGCAGCGCTTATCGTCAA    200

BSNT_05577___    201 CTATTTGATTACGCTTGTTTATTTCGAACCGCGCCCGTTCGTTGCGCATA    250
                     |||..|.||.|||...||.|||.||||.||||||||.||.||.|.|||||
RBAM_033710__    201 CTACCTCATCACGAAGGTCTATATCGAGCCGCGCCCCTTTGTCGAGCATA    250

BSNT_05577___    251 CAGTGCATACACTGATTCCGCATGCTGCGGATGCTTCATTTCCAAGTGAC    300
                     |.||.|||||.|||||.||.|||||.||||||||||||||||||||||||
RBAM_033710__    251 CGGTTCATACGCTGATCCCTCATGCCGCGGATGCTTCATTTCCAAGTGAC    300

BSNT_05577___    301 CACACGACAGGCGCATTAGCGATTTCTATTGCGATGCTTTTCAGAAACCG    350
                     ||.|||||||||||.||.||||||||.||||||||.||.|||.|.|||..
RBAM_033710__    301 CATACGACAGGCGCTTTGGCGATTTCAATTGCGATTCTGTTCCGCAACAA    350

BSNT_05577___    351 CAAAATCGGCTGGCCGCTTGTCATTTTTGGGCTTTTGACAGGCTTTTCGA    400
                     .|||.||||||||||||||||.|||||.||.||||||||.|||||.||.|
RBAM_033710__    351 AAAACTCGGCTGGCCGCTTGTGATTTTCGGCCTTTTGACCGGCTTCTCAA    400

BSNT_05577___    401 GAATTTGGGTGGGACATCACTATCCGGTAGATGTATTGGGCAGCCTCGTT    450
                     ||||||||||.||.||.||.||||||.|.|||||..|.||.||   |.||
RBAM_033710__    401 GAATTTGGGTCGGCCACCATTATCCGATCGATGTGCTCGGAAG---CATT    447

BSNT_05577___    451 ATCG---CCATCATTATCGGGTTCCTTTTCTTTAGATTTTCAGATCTGCT    497
                     ||||   ||.|||||.||||.|||||..|.||.|||||||||.||.||||
RBAM_033710__    448 ATCGTTTCCCTCATTGTCGGATTCCTGCTGTTCAGATTTTCAAATGTGCT    497

BSNT_05577___    498 TCGCCCGTTCGTCGATTTGGTCGTGAGGATCTATGAAGCCATTATC---A    544
                     |||.|||.|.||||||.||.|||||.|.|||||||||   |.||||   .
RBAM_033710__    498 TCGTCCGATTGTCGATCTGATCGTGCGAATCTATGAA---AGTATCGTTC    544

BSNT_05577___    545 ATAAACTGACGAAAAAACCAACCGATCAAAATTTCTAA    582
                     |||||      |..|||.|.||..|.||.|||.|.|||
RBAM_033710__    545 ATAAA------AGCAAATCGACAAACCATAATATATAA    576


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.