Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05564 and RBAM_033640
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:03
# Commandline: needle
# -asequence dna-align/BSNT_05564___ywoG.1.9828.seq
# -bsequence dna-align/RBAM_033640___ywoG.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05564___ywoG-RBAM_033640___ywoG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05564___ywoG-RBAM_033640___ywoG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05564___ywoG
# 2: RBAM_033640___ywoG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1213
# Identity: 923/1213 (76.1%)
# Similarity: 923/1213 (76.1%)
# Gaps: 38/1213 ( 3.1%)
# Score: 3445.5
#
#
#=======================================
BSNT_05564___ 1 TTGAAAAAAGCGGATGCGATATGGACCAAGGATTTTATTATGGTCCTGCT 50
||||..|||.|.||..||||.||||||||.|||||||||||||||.|.||
RBAM_033640__ 1 TTGAGTAAATCTGACTCGATCTGGACCAAAGATTTTATTATGGTCGTACT 50
BSNT_05564___ 51 TGTCAATTTATTTGTGTTTGTGTTCTTTTATACATTTTTAACTGTATTGC 100
.||.|||||||||||.|||||||||||||||||||||||..|.||..|||
RBAM_033640__ 51 CGTGAATTTATTTGTCTTTGTGTTCTTTTATACATTTTTGGCCGTGCTGC 100
BSNT_05564___ 101 CGATCTACACGCTGCAAGAGCTTGGCGGTACAGAATCACAAGGCGGGCTT 150
|.|||||.|.|.|.||.|||||||||||.|..|||||.|||||.||||||
RBAM_033640__ 101 CTATCTATATGATTCAGGAGCTTGGCGGCAGTGAATCGCAAGGAGGGCTT 150
BSNT_05564___ 151 TTAATCAGCCTGTTCCTTCTGTCTGCGATCATTACACGGCCTTTCTCCGG 200
||.||||||||||||||..|.|||||.||.||.||.||.|||||.||.||
RBAM_033640__ 151 TTGATCAGCCTGTTCCTGTTATCTGCTATTATCACCCGTCCTTTTTCAGG 200
BSNT_05564___ 201 AGCCATCGTTGAGCGTTTCGGGAAGAAAAGAATGGCGATTGTATCAATGG 250
.||.||..||||.||.|||||.||||||||||||.||||||||||..|||
RBAM_033640__ 201 GGCGATTATTGAACGGTTCGGCAAGAAAAGAATGACGATTGTATCCTTGG 250
BSNT_05564___ 251 CGCTCTTCGCCCTATCATCTTTTCTGTATATGCCGATTCATAACTTTTCC 300
||||.||||||||.||.||||.|.|||||.|||||.|.||.||.||.|..
RBAM_033640__ 251 CGCTGTTCGCCCTGTCTTCTTATTTGTATTTGCCGCTACACAATTTCTAT 300
BSNT_05564___ 301 CTGCTGCTCGGATTGCGGTTCTTCCAAGGGATTTGGTTCAGCATTTTAAC 350
||||||||||||.||||.||.||||||||.||.|||||||||||||||||
RBAM_033640__ 301 CTGCTGCTCGGACTGCGTTTTTTCCAAGGCATCTGGTTCAGCATTTTAAC 350
BSNT_05564___ 351 GACTGTTACAGGTGCAATTGCCGCTGATATTATTCCAGCCAAACGGCGCG 400
|||.|||||.||.||||||||||||||.||||||||.|||||.|||||||
RBAM_033640__ 351 GACGGTTACGGGCGCAATTGCCGCTGACATTATTCCCGCCAAGCGGCGCG 400
BSNT_05564___ 401 GTGAAGGGCTTGGATACTTTGCCATGTCTATGAACCTCGCTATGGCGATT 450
|.||.|||||.||.||.|||||.||||||||||||||.||.||||||||.
RBAM_033640__ 401 GCGAGGGGCTCGGTTATTTTGCGATGTCTATGAACCTTGCCATGGCGATC 450
BSNT_05564___ 451 GGGCCTTTCCTTGGCCTGAAT-TTGATGAGAGTGGTAAGCTTTCCTGTAT 499
||.|||||.||.||.||||.| ||| |||.|||..|....||.||.||.|
RBAM_033640__ 451 GGTCCTTTTCTCGGGCTGAGTCTTG-TGAAAGTCATTTCGTTCCCGGTTT 499
BSNT_05564___ 500 TCTTTACAGCCTTTGCGCTGTTTATGGTTGC---GGGCTTACTTGTTTCG 546
|||||||....|||||..|.||| |||.| .|||||.||..||.|.
RBAM_033640__ 500 TCTTTACGATTTTTGCCGTATTT---GTTTCTTTAGGCTTGCTGATTGCT 546
BSNT_05564___ 547 TTCTTGATAAAAGTGCCG---CAAAGTAAGGACAGCGGCACGACTGTATT 593
||..||||....|||||| ||| ||..|||||||.||||||||.||
RBAM_033640__ 547 TTTATGATTCGTGTGCCGGATCAA---AACAACAGCGGAACGACTGTCTT 593
BSNT_05564___ 594 CCGTTTTGCGTTCTCGGATATGTTTGAAAAGGGCGCACTCAAAATTGCGA 643
|||||||.|.|||||.||.|||||||||||.|||||.||.|||||.||||
RBAM_033640__ 594 CCGTTTTTCTTTCTCCGACATGTTTGAAAAAGGCGCGCTTAAAATCGCGA 643
BSNT_05564___ 644 CGGTCGGTTTGTTTATTTCTTTCTGTTATTCAACAGTCACATCATATCTG 693
..|||||.||||..|||||||||||||||||||..||.||.||||||.|.
RBAM_033640__ 644 TTGTCGGGTTGTCCATTTCTTTCTGTTATTCAAGTGTGACTTCATATTTA 693
BSNT_05564___ 694 TCTGTATTCGCCAA----ATCAGTTGACCTTTCGGATATCAGCGGATATT 739
||.||.|..||.|| ||| .||||.|.||||.|||||||.||||
RBAM_033640__ 694 TCCGTTTATGCAAAGACGATC----CACCTGTTGGATGTCAGCGGCTATT 739
BSNT_05564___ 740 TCTTTGTTTGTTTTGCGGTGACAATGATGATTGCACGCCCG----TTCAC 785
||||.||.|||||.||.||||| ||||||.|| |||||| |||||
RBAM_033640__ 740 TCTTCGTCTGTTTCGCAGTGAC---GATGATGGC-CGCCCGTCCTTTCAC 785
BSNT_05564___ 786 AGGGAAATTGTTCGACAAAGTCGGACCGGGCATTGTCATTTATCCATCAA 835
|||.||..||||.||||.|||.||.|||||.||.|||||.|||||.||.|
RBAM_033640__ 786 AGGAAAGCTGTTTGACAGAGTGGGGCCGGGAATCGTCATCTATCCGTCGA 835
BSNT_05564___ 836 TCCTGATTTTCTCTGTCGGACTCTGCATGCTGTCCTTCACACATAGCGGC 885
|..|..|.|||||.|..||.||.|||||||||.|..|.|||.|.||||.|
RBAM_033640__ 836 TTATCGTGTTCTCCGCGGGGCTTTGCATGCTGGCGATGACAAACAGCGCC 885
BSNT_05564___ 886 TTAATGCTTCTGCTT-TCAGGGGCGGTTATCGGTCTTGGCTACGGATCAA 934
.|.|||||||| ||| ||.||.||.||.||||||||.||.|||||.||.|
RBAM_033640__ 886 CTCATGCTTCT-CTTGTCCGGTGCCGTAATCGGTCTCGGATACGGCTCTA 934
BSNT_05564___ 935 TCGTTCCTTGCATGCAAACATTGGCGATTCAGAAATCTCCGGCTCACCGC 984
||||.||.||||||||.||..|||||||||||||.||.||.|..|||||.
RBAM_033640__ 935 TCGTACCGTGCATGCAGACGCTGGCGATTCAGAACTCGCCCGGACACCGT 984
BSNT_05564___ 985 TCCGGTTTTGCAACGGCAACGTTCTTTACCTTCTTTGACAGCGGAATTGC 1034
||.||.|||||.|||||.||.|||||.||.||||||||||||||.|||||
RBAM_033640__ 985 TCAGGCTTTGCGACGGCTACCTTCTTCACTTTCTTTGACAGCGGGATTGC 1034
BSNT_05564___ 1035 TGTAGGATCGTATGTATTCGGATTGTTTGTAGCATCTGCCGGCTTCTCTG 1084
.|..|||||.|||||||||||..|.|||||.||.||.|||||.|||..|.
RBAM_033640__ 1035 CGGCGGATCCTATGTATTCGGCCTCTTTGTCGCTTCGGCCGGATTCCATT 1084
BSNT_05564___ 1085 CCATTTATTTAACAGCGGGGCTGTTCGTTTTAATTGCTCTGCTTCTCTAT 1134
|.||||||.|..||||||||||||||||..|.||||||.||||.||.|||
RBAM_033640__ 1085 CGATTTATCTGGCAGCGGGGCTGTTCGTCCTGATTGCTTTGCTCCTGTAT 1134
BSNT_05564___ 1135 ACGTGGAGCCAGAAAAAAA-----CTGC-AGAGGCTGAAGGAAAAGTGTC 1178
...|||||||||||||||| |.|| .||.||.||.|||||.||.||
RBAM_033640__ 1135 GGCTGGAGCCAGAAAAAAAGAACGCCGCTTGAAGCGGACGGAAACGTTTC 1184
BSNT_05564___ 1179 TATTGCAGAATAA 1191
.||.|||||.|.|
RBAM_033640__ 1185 AATCGCAGACTGA 1197
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