Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05561 and RBAM_033620

See Amino acid alignment / Visit BSNT_05561 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:03
# Commandline: needle
#    -asequence dna-align/BSNT_05561___spoIIID.1.9828.seq
#    -bsequence dna-align/RBAM_033620___spoIIID.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05561___spoIIID-RBAM_033620___spoIIID.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05561___spoIIID-RBAM_033620___spoIIID.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05561___spoIIID
# 2: RBAM_033620___spoIIID
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 282
# Identity:     248/282 (87.9%)
# Similarity:   248/282 (87.9%)
# Gaps:           0/282 ( 0.0%)
# Score: 1104.0
# 
#
#=======================================

BSNT_05561___      1 GTGCACGATTACATCAAAGAGCGAACAATCAAGATAGGGAAGTACATCGT     50
                     |||||||||||||||||||||||||||||||||||.||.|||||.|||||
RBAM_033620__      1 GTGCACGATTACATCAAAGAGCGAACAATCAAGATTGGCAAGTATATCGT     50

BSNT_05561___     51 GGAGACAAAGAAAACCGTTCGTGTCATTGCGAAGGAATTTGGTGTTTCCA    100
                     ||||||.||.|||||||||||||||||||||||.||.|||||||||||||
RBAM_033620__     51 GGAGACGAAAAAAACCGTTCGTGTCATTGCGAAAGAGTTTGGTGTTTCCA    100

BSNT_05561___    101 AAAGTACAGTACACAAGGATTTAACAGAGCGTCTGCCTGAAATTAACCCC    150
                     |||||||.||||||||.|||.|.||||||||.|||||||||||.||.||.
RBAM_033620__    101 AAAGTACCGTACACAAAGATCTGACAGAGCGCCTGCCTGAAATCAATCCT    150

BSNT_05561___    151 GACTTGGCAAACGAAGTGAAAGAAATACTCGATTATCATAAATCCATCAG    200
                     ||||||||.||.|||||.||||||||||||||||||||||||||||||||
RBAM_033620__    151 GACTTGGCGAATGAAGTAAAAGAAATACTCGATTATCATAAATCCATCAG    200

BSNT_05561___    201 GCATTTAAGAGGAGGAGAAGCGACAAAGCTCAAATATAAAAAAGATGAAA    250
                     .|||||||||||.|||||.|||||.||.||.||.||.||.||.|||||||
RBAM_033620__    201 ACATTTAAGAGGGGGAGAGGCGACGAAACTAAAGTACAAGAAGGATGAAA    250

BSNT_05561___    251 TTCTCGAAGGAGAGCCTGTTCAGCAATCGTAA    282
                     ||||.|||||.|||||.||||||||..||||.
RBAM_033620__    251 TTCTTGAAGGGGAGCCCGTTCAGCAGCCGTAG    282


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