Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05542 and RBAM_033530
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:02
# Commandline: needle
# -asequence dna-align/BSNT_05542___ywpH.1.9828.seq
# -bsequence dna-align/RBAM_033530___ywpH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05542___ywpH-RBAM_033530___ywpH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05542___ywpH-RBAM_033530___ywpH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05542___ywpH
# 2: RBAM_033530___ywpH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 352
# Identity: 255/352 (72.4%)
# Similarity: 255/352 (72.4%)
# Gaps: 20/352 ( 5.7%)
# Score: 902.0
#
#
#=======================================
BSNT_05542___ 1 ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCT 50
.||||.||.||.||.|||||||||||.||.||.||.|||||.||.||.||
RBAM_033530__ 1 TTGTTTAACCACGTTATGCTTGTCGGCCGGCTGACGAAAGACCCGGAGCT 50
BSNT_05542___ 51 TCGCTACACTTCCACCGGTGCGGCA-----GTTGCACATGTTACGCTCGC 95
.||.| ||.||.|.|.| |||| ||.||||||.|||||.|.||
RBAM_033530__ 51 CCGTT----TTACAGCAGCG-GGCATTCCCGTCGCACATATTACGTTGGC 95
BSNT_05542___ 96 GGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACG 145
|||.|||||||..||.||.|..||.||.|||||||.||.|.|.||.|.||
RBAM_033530__ 96 GGTAAACCGCAATTTTAAAAGCGCGTCGGGTGAAACCGGAACCGACTTCG 145
BSNT_05542___ 146 TCAATTGCACACTTTGGAGAAAAACAGCTGAAAACACGGCGTTGTATTGC 195
||||.||.||..|.||||||||||..||||||||||||||.|||||.|||
RBAM_033530__ 146 TCAACTGTACCATCTGGAGAAAAAACGCTGAAAACACGGCATTGTACTGC 195
BSNT_05542___ 196 CAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGAAGCTA 245
||||||||.||..|.|||||.||||||||..|.||.|||||.||||||||
RBAM_033530__ 196 CAAAAAGGGTCAATGGTCGGTGTAAGCGGCAGAATCCAGACGAGAAGCTA 245
BSNT_05542___ 246 TGAAAACGA-GGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGAC 294
|||||| || .||.|||||.||.||.|||||.||.||.||..|||||||.
RBAM_033530__ 246 TGAAAA-GACAGACGGCGTAAAAGTTTATGTGACCGAGGTCATGGCTGAT 294
BSNT_05542___ 295 ACTGTTCGTTTTATGGACCCTAAACCCCGGGAAAAAGCTGCTGATTGA-- 342
||.|||||.||||||||.|..|||| .||||.|||.||||..|||
RBAM_033530__ 295 ACCGTTCGGTTTATGGATCAAAAAC----AGAAAGAGCCGCTGGCTGAAT 340
BSNT_05542___ 342 -- 342
RBAM_033530__ 341 AG 342
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