Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05534 and RBAM_033480

See Amino acid alignment / Visit BSNT_05534 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:01
# Commandline: needle
#    -asequence dna-align/BSNT_05534___ywqC.1.9828.seq
#    -bsequence dna-align/RBAM_033480___ywqC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05534___ywqC-RBAM_033480___ywqC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05534___ywqC-RBAM_033480___ywqC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05534___ywqC
# 2: RBAM_033480___ywqC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 773
# Identity:     553/773 (71.5%)
# Similarity:   553/773 (71.5%)
# Gaps:          52/773 ( 6.7%)
# Score: 1886.5
# 
#
#=======================================

BSNT_05534___      1 ATGGGAGAATCTACTAGCTTAAAAGAGATATTATCAACGTTAACAAAACG     50
                     ||||||||||||||.|||.||||.||.|||||..|||...|.|.|||.||
RBAM_033480__      1 ATGGGAGAATCTACAAGCATAAAGGAAATATTCGCAATACTGAGAAAGCG     50

BSNT_05534___     51 CATACTTTTGATTATGATTGTAACCGCAGCTGCCACTGCTGCCGGCGGAC    100
                     ..|.||.||.||..|.|||.|.|||||.||.||..||||.||.|||||||
RBAM_033480__     51 TCTGCTGTTTATACTTATTATTACCGCGGCGGCATCTGCCGCAGGCGGAC    100

BSNT_05534___    101 TCATTAGTTTCTTCGCACTTACACCCATCTATGAAAATTCAACTCAGATT    150
                     ||||.|||||||||||.|||||.||..||||||||||.||||||||.|||
RBAM_033480__    101 TCATCAGTTTCTTCGCTCTTACGCCGGTCTATGAAAACTCAACTCAAATT    150

BSNT_05534___    151 CTGGTCAACCAATCGAAAAATGAACGAAAAGAAGTCCAATTTAACGATGT    200
                     .||||||.||||||.|||||..|.|.|||||||||||||||.||.|||||
RBAM_033480__    151 TTGGTCAGCCAATCCAAAAACAATCAAAAAGAAGTCCAATTCAATGATGT    200

BSNT_05534___    201 CCAAACCAATCTTCAGTTAATCAATACGTACAATGTCATCATTAAGAGCC    250
                     .||||||||.||.||.||||||||.|||||.|||||||||||.||.||.|
RBAM_033480__    201 TCAAACCAACCTCCAATTAATCAACACGTATAATGTCATCATCAAAAGTC    250

BSNT_05534___    251 CTGCCATCTTAGATGAAGTCATTAAAGAAATGGGCCTGTCGATGACATCC    300
                     |.|.||||.|.|||||.||.||||||.|..||...|||||.|||||.||.
RBAM_033480__    251 CGGTCATCCTCGATGAGGTGATTAAACAGCTGCATCTGTCCATGACTTCG    300

BSNT_05534___    301 CAAGAAC-TGAATGAC-AAAATTACCGTATCCAGCGAACAGGACTCCCAA    348
                     .|||||| |||||  | |||||.||.||.||||||||.|||||.||.|||
RBAM_033480__    301 AAAGAACTTGAAT--CGAAAATCACGGTGTCCAGCGAGCAGGATTCACAA    348

BSNT_05534___    349 GTGGTCAACATATCAGTCAGGGAT---GA----AAACGCGGAAACAGCGG    391
                     ||.||.|..||..|.||..|||||   ||    ||  ||||     ||||
RBAM_033480__    349 GTCGTGACGATCGCCGTGCGGGATACGGATGCTAA--GCGG-----GCGG    391

BSNT_05534___    392 CTCATATTGCCAATACTATAGCATCTGTTTTTCAAGACAAAATCACATCC    441
                     |...|||.||.|||.|..|.|||.|.||||||||.|||||.|||||..||
RBAM_033480__    392 CCGTTATGGCAAATGCGGTTGCAGCCGTTTTTCAGGACAAGATCACCGCC    441

BSNT_05534___    442 ATTATGAATGTTGACAATGTCAGCATTCTGTCAAAAGCCGAGGTTTCAGA    491
                     ||||||||.||.||.|||||||||||.||.|||||.|||||.|...| |.
RBAM_033480__    442 ATTATGAACGTGGATAATGTCAGCATCCTTTCAAAGGCCGAAGCGGC-GG    490

BSNT_05534___    492 ACATCC-GTCCCCTGTATCGCCAAAGCCGCTA--CTAAACATTGCCATCG    538
                     |||.|| |||.||.|.|..|||.|| ||| ||  ||.|||||.||.||.|
RBAM_033480__    491 ACAGCCAGTCACCGGCAGAGCCTAA-CCG-TAAGCTGAACATCGCGATTG    538

BSNT_05534___    539 CGTTTGCAGCCGGA---TTGGCGGGAAGCATCGGACTGGCCTTCCTGCTC    585
                     |||||||.||||||   ||||..|||   |||||.||.|||||..||||.
RBAM_033480__    539 CGTTTGCCGCCGGACTTTTGGGCGGA---ATCGGTCTCGCCTTTTTGCTG    585

BSNT_05534___    586 GAGCATTTGGATAATACGATCAAATCGGAAGAGCAGCTCGAATCCTTGCT    635
                     ||.|||.|||||||||||||||||||||||||.|||||.|||||..||||
RBAM_033480__    586 GAACATCTGGATAATACGATCAAATCGGAAGAACAGCTGGAATCGCTGCT    635

BSNT_05534___    636 GGACATACCTGTTTTAGGGACAGT---TTCCACCATTGCGAATGAGCAGA    682
                     .|.|||.||..|..|.||.||.||   |||.|.||.|.|.|        |
RBAM_033480__    636 CGGCATCCCGATCCTGGGAACGGTTACTTCAATCAGTACTA--------A    677

BSNT_05534___    683 AAACAG------CAAAGACCTTACAGGGTTTCC--AATCTGAAAAAACGG    724
                     |.||||      ||||.||.|.|   ||.|..|  ||.|..||.||.|||
RBAM_033480__    678 AGACAGCGTTGCCAAAAACTTGA---GGATGGCGGAAACCAAACAAGCGG    724

BSNT_05534___    725 GGAGTGGACATTTTGGCGCTTAG    747
                     ||.|.||||||.|||.|||.||.
RBAM_033480__    725 GGGGCGGACATGTTGACGCGTAA    747


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05534 and RBAM_033480

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
