Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05530 and RBAM_033450
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:00
# Commandline: needle
# -asequence dna-align/BSNT_05530___ywqF.1.9828.seq
# -bsequence dna-align/RBAM_033450___ywqF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05530___ywqF-RBAM_033450___ywqF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05530___ywqF-RBAM_033450___ywqF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05530___ywqF
# 2: RBAM_033450___ywqF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1382
# Identity: 981/1382 (71.0%)
# Similarity: 981/1382 (71.0%)
# Gaps: 115/1382 ( 8.3%)
# Score: 3401.5
#
#
#=======================================
BSNT_05530___ 1 ATGAATATAACAGTCATCGGAACAGGCTATGTCGGTCTTGTGACAGGTGT 50
|||||.||||||||.||||||||||||||.|||||||||||||||||.||
RBAM_033450__ 1 ATGAAAATAACAGTGATCGGAACAGGCTACGTCGGTCTTGTGACAGGAGT 50
BSNT_05530___ 51 TTCTCTTTCTGAGATTGGACATCATGTAACCTGCATTGATATTGACGCTC 100
.||||||||.||.||.||.|||.|.|||||.|||||.||.|||||||..|
RBAM_033450__ 51 GTCTCTTTCAGAAATCGGCCATGACGTAACATGCATAGACATTGACGAAC 100
BSNT_05530___ 101 ACAAGATTGATGAAATGAGAAAGGGCATTTCCCCCATATTTGAACCAGGT 150
..|||.||||..|.||||||||||||.|.|||||.||.||||||||.||.
RBAM_033450__ 101 GTAAGGTTGAGCAGATGAGAAAGGGCTTGTCCCCTATCTTTGAACCGGGC 150
BSNT_05530___ 151 CTTGAAGAGCTGATGAGAAAAAATA-CAGCTG--ATGGACGGCTGAACTT 197
||||||||..||||||.|..||||| |.||.| || ||||||...||
RBAM_033450__ 151 CTTGAAGATATGATGAAACGAAATATCGGCCGGCAT---CGGCTGGCATT 197
BSNT_05530___ 198 TGAAAAAAGCTATGAGAAA-GGCTTGGCACAGGCAGACATCATTTTTATA 246
|||||..|||||.||.||| ||||| ||..|.||.|||.|.|||||||||
RBAM_033450__ 198 TGAAACGAGCTACGAAAAAGGGCTT-GCGGAAGCTGACGTTATTTTTATA 246
BSNT_05530___ 247 GCGGTCGGCACACCGCAGAAAAG-CGATGGGCACGCCAATCTGGAGCAAA 295
||||||||.||.||||| ||||| .||.||||||||.||.||.....|.|
RBAM_033450__ 247 GCGGTCGGAACGCCGCA-AAAAGAAGACGGGCACGCAAACCTTACTTATA 295
BSNT_05530___ 296 TTACAGATGCGGCCAAACGCATCGCAAAGCA----TGTCAAACGAGATAC 341
||..|.|||..|||.||||.||.||..|.|| |||.| ||||.|
RBAM_033450__ 296 TTGAAAATGTCGCCGAACGGATTGCCGAACATATTTGTAA----AGATGC 341
BSNT_05530___ 342 AGTCGTGGTAACGAAAAGCACAGTGCCCGTTGGGACAAA----------- 380
..||||.||.||.||||||||.||.|||||.||.||.||
RBAM_033450__ 342 GATCGTCGTGACAAAAAGCACGGTTCCCGTGGGAACGAATGACAGGATCA 391
BSNT_05530___ 381 -CGATTTGATTAATGGACTGATCACTGAACATCTAGCGGAGCCTGTCAGT 429
|||..|.|||.||..||.| ||||| |||||| .||.|..
RBAM_033450__ 392 GCGAAGTTATTCATTCACGG----CTGAA-----AGCGGA---CGTGAAC 429
BSNT_05530___ 430 ATTTCGGTTGCATCCAATCCGGAATTTTTGCGTGAGGGGTCGGCGATCTA 479
|||||..|.||.||.||||||||||||.|.|||||.||.|||||.||..|
RBAM_033450__ 430 ATTTCAATCGCCTCGAATCCGGAATTTCTCCGTGAAGGTTCGGCAATTCA 479
BSNT_05530___ 480 TGATACCTTTCATGGTGACAGGATCGTGATCGGGACGGCCGATGA---GA 526
.|||||||||||.||.|||.|.||||||||||| |||.||.|| |.
RBAM_033450__ 480 CGATACCTTTCACGGCGACCGCATCGTGATCGG---GGCTGAAGACCGGC 526
BSNT_05530___ 527 AAACAGC---AAATACGCTGGAGGAGCTCTTC-CGTCCGTTTCAAATCCC 572
|.|| || || |||||.||...|.|.||| || |||.||...||.||
RBAM_033450__ 527 AGAC-GCGGGAA--ACGCTTGACCGGGTTTTCGCG-CCGCTTGCGATTCC 572
BSNT_05530___ 573 GATTTACCAAACGGATATCAGAAGCGCCGAGATGATCAAATATGCCTCAA 622
|.|.||.||.|||||.|||||||||||.|||||||||||||||||.||||
RBAM_033450__ 573 GGTATATCATACGGACATCAGAAGCGCTGAGATGATCAAATATGCGTCAA 622
BSNT_05530___ 623 ATGCTTTTCTGGCCACTAAGATCAGTTTTATAAACGAAATTTCGAATATA 672
|.||.|||.|.||..|.||.|||||||||||.||.||||||||..|||||
RBAM_033450__ 623 ACGCATTTTTAGCGGCAAAAATCAGTTTTATTAATGAAATTTCTCATATA 672
BSNT_05530___ 673 TGTGAAAAGGTCGGCGCCGATATTGAAGCAGTCGCATACGGGATGGGACA 722
||||||||.|||||.||.|||.|.|||.||||||||.||||.||||||..
RBAM_033450__ 673 TGTGAAAAAGTCGGTGCGGATGTGGAATCAGTCGCACACGGAATGGGATT 722
BSNT_05530___ 723 GGATAAGCGGATCGGGAGCCAGTTTTTAAAAGCGGGTATAGGCTACGGCG 772
||||||.||||||||.|..||.||.||||.|||.||.||.||.|||||||
RBAM_033450__ 723 GGATAAACGGATCGGCAATCAATTCTTAAGAGCCGGCATCGGTTACGGCG 772
BSNT_05530___ 773 GCTCTTGTTTTCCAAAGGACACAAACGCCCTCGTGCAAATTGCCGGCAAT 822
|.||.||||||||.|||||.|||||||||||||||||.||.||.||..||
RBAM_033450__ 773 GTTCCTGTTTTCCGAAGGATACAAACGCCCTCGTGCAGATCGCGGGACAT 822
BSNT_05530___ 823 GTCGAGCATGATTTTGAACTGCTGAAATCGGTTATCAAAGTCAATAACAA 872
||.|||||||||||||||.|||||||.||.||.||.||||||||.||.||
RBAM_033450__ 823 GTGGAGCATGATTTTGAATTGCTGAAGTCCGTCATTAAAGTCAACAATAA 872
BSNT_05530___ 873 TCAGCAGGCGATGCTGGTTGATAAAGCGCTGAACAGGCTCGGCGGGGTGA 922
.||||||.|.||||||||||||||||.||||||||||||||||||.||||
RBAM_033450__ 873 CCAGCAGTCCATGCTGGTTGATAAAGTGCTGAACAGGCTCGGCGGTGTGA 922
BSNT_05530___ 923 CGGGAAAAACGATTGCCCTTTTAGGCCTGTCATTTAAACCGAATACGGAC 972
|.||.||.||.||.||..|.|||||.|||||.|||||.||||||||.||.
RBAM_033450__ 923 CAGGGAAGACCATCGCGTTATTAGGGCTGTCTTTTAAGCCGAATACAGAT 972
BSNT_05530___ 973 GATATGAGAGAAGCGCCGTCAATTGTTATTGCAGACCGTCTCGCTGCGCT 1022
||||||.|.||.||.|||||.|||||.||||||||.|||||.||.||.||
RBAM_033450__ 973 GATATGCGGGATGCCCCGTCCATTGTCATTGCAGATCGTCTGGCGGCTCT 1022
BSNT_05530___ 1023 CGACGCCCGTATCAGAGCCTACGATCCCATTGCAGTTGGTCATGCAAAGC 1072
.||||||||.||.|.|||.||||||||.||.|| .||||.|...||
RBAM_033450__ 1023 TGACGCCCGGATGACAGCGTACGATCCGATCGC-----TTCATTCCGGGC 1067
BSNT_05530___ 1073 ATGTTC---------TCCCGCAAGCTGTTGAA------TATAAAGAGACG 1107
||| |||.|| |||| |||...|||.|.
RBAM_033450__ 1068 ---TTCCGGGCTGCTTCCGGC-------TGAAGTTTCCTATCGGGAGTCC 1107
BSNT_05530___ 1108 ATCGAGGAAGCTGTCAAAGGTTCTGACGCCGTCATGATTTTAACCGACTG 1157
||.||.|||||.||||..||..|.||.||||||.|||||.|.||.||.||
RBAM_033450__ 1108 ATAGAAGAAGCCGTCAGGGGAGCGGATGCCGTCCTGATTCTGACAGATTG 1157
BSNT_05530___ 1158 GGCTGACATTAAACAATTTCCGTTAGCGGCTTATCAGGATTTGATGGAAT 1207
||...|.||||||||.||.|||.|.|..||.||..|.||..||||||||.
RBAM_033450__ 1158 GGAACAAATTAAACACTTCCCGCTTGAAGCGTACAAAGAGCTGATGGAAA 1207
BSNT_05530___ 1208 CGCCGCTCATATTTGACGGCAGAAACTGCTACACATTGGATGAAGCTG-- 1255
|.|||.|.||.||.|||||.|||||||||.||.|..|.||.|||||.|
RBAM_033450__ 1208 CCCCGGTTATTTTCGACGGGAGAAACTGCCACTCGCTTGAGGAAGCGGAA 1257
BSNT_05530___ 1256 -CGGCTGTAGGAGTGGAGTATTATTCTGTCGGTCGGAAG----GCGGTTG 1300
.||| .||.|||||.|| |.|.||..||||||| ||.||.|
RBAM_033450__ 1258 CAGGC---GGGCGTGGAATA----TATCTCAATCGGAAGAAGAGCCGTCG 1300
BSNT_05530___ 1301 TTCCGTCAG---------GTGCAATTCAATAG 1323
|.|| |||| || ||.||.|
RBAM_033450__ 1301 TGCC-TCAGACTGATTCTGT-CACTTGA---- 1326
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