Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05527 and RBAM_033440
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:00
# Commandline: needle
# -asequence dna-align/BSNT_05527.1.9828.seq
# -bsequence dna-align/RBAM_033440___ywqG.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05527-RBAM_033440___ywqG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05527-RBAM_033440___ywqG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05527
# 2: RBAM_033440___ywqG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 808
# Identity: 335/808 (41.5%)
# Similarity: 335/808 (41.5%)
# Gaps: 365/808 (45.2%)
# Score: 1151.0
#
#
#=======================================
BSNT_05527 0 -------------------------------------------------- 0
RBAM_033440__ 1 GTGGAAAAAACATGGAAATTGCCGAAGCAAATGGAATCATCCCGCGGTCT 50
BSNT_05527 0 -------------------------------------------------- 0
RBAM_033440__ 51 GCTGGAAACGTCAGCACGGCGCTTTATCAAACTGCACGTCAAAAAAGCTG 100
BSNT_05527 0 -------------------------------------------------- 0
RBAM_033440__ 101 AAACGGGGCGGTATGACAGTAAAATTGCCGGAGACCCCTATTTTCCGAAA 150
BSNT_05527 0 -------------------------------------------------- 0
RBAM_033440__ 151 CATGAACCATATCCTAAAGATGAAAGCGGCAGGCCGATGAAGCTTCTCGC 200
BSNT_05527 0 -------------------------------------------------- 0
RBAM_033440__ 201 TCAAATCAATTTTGCGGATATGCCCGGACTCCCTGATTTTCCGGACACCG 250
BSNT_05527 0 -------------------------------------------------- 0
RBAM_033440__ 251 GCATTCTTCAGTTTTACATATCGGTCAGTGATGACGTATACGGTCTGAAT 300
BSNT_05527 1 ---------------------------------GTGATCTATTTTGAAAA 17
||.|..|||||||||.|
RBAM_033440__ 301 TTTGACGACGGGTGCGCGCAAACGGGTTTCTGCGTCAAATATTTTGAACA 350
BSNT_05527 18 TATCATAGAAAACGAAGACGAGCTTGTTTCTGATTTTTCATT------TA 61
|.|.|.||.|.|.||||..|||||..|...|||||||||.|| |.
RBAM_033440__ 351 TGTGACAGCAGAAGAAGCGGAGCTCATGGATGATTTTTCTTTCGTTCATG 400
BSNT_05527 62 TTGGCACAGGCGAATGTGATTTTCCGATTTTATCAGAAGCGGCAG-TCGA 110
|| |.|.||||| |..||||||||||||..||||||||| ||.| ||..
RBAM_033440__ 401 TT-GAAGAGGCG--TACGATTTTCCGATTCAATCAGAAGC-GCTGATCAC 446
BSNT_05527 111 GCCTGTGAAATCTTCGGAATGGGTGCTGCCTACAGATTTTCAATTTGAGC 160
.||||.|...|||.|.|||||||||||.||..|.|||||||||||...||
RBAM_033440__ 447 CCCTGAGCTGTCTGCTGAATGGGTGCTCCCGTCTGATTTTCAATTCAGGC 496
BSNT_05527 161 AGTATACGGGCATGGAAACAATGGAGTTCTTTGGTCAGTTCGGCGA---- 206
|||||.|.||.|||||..|..|.||.|..||.|..|||||.|.|||
RBAM_033440__ 497 AGTATGCCGGGATGGATGCCTTTGACTATTTCGAGCAGTTTGACGATGAG 546
BSNT_05527 207 --GGATGAAGAAGACATTTATAATGAACTGGCTGAAAACGGATTTGGCCA 254
|.||||.||| |||| |.|..||||.|||.|||||
RBAM_033440__ 547 GTGTATGACGAA------TATA---------CGGCGAACGCATTCGGCCA 581
BSNT_05527 255 TAAAATCGGCGGATACGCTTCTTTTACCCAGCATGATCCACGGGAATACG 304
||||||||||||.||.||.||.||.||||||.|.|||||.|||...|||.
RBAM_033440__ 582 TAAAATCGGCGGCTATGCGTCCTTCACCCAGGAAGATCCGCGGTCTTACT 631
BSNT_05527 305 CATATAAAGAACACACCATCATGCTTTTACAAATTGATTCAGACGATGAT 354
|..||.||.|.||.||.||..|||||||.||||||||||||||.|||||.
RBAM_033440__ 632 CCCATCAAAACCATACGATTCTGCTTTTGCAAATTGATTCAGATGATGAC 681
BSNT_05527 355 ATCGATTCAATGTGGGGAGACGTCGGCATCGCCAATTTTTTCATCACACC 404
||.|||||.|||||||||||.||.||.|||||||||||.||.||||.|||
RBAM_033440__ 682 ATTGATTCGATGTGGGGAGATGTGGGAATCGCCAATTTCTTTATCAGACC 731
BSNT_05527 405 TGACGATCTAAGGAAAAAAGACTTTTCAAACGTTCTGTATAACTGGGACT 454
.||.|||.|.|.||.||||||.||.|||||||||.||||.||||||||||
RBAM_033440__ 732 GGAAGATTTGAAGAGAAAAGATTTCTCAAACGTTTTGTACAACTGGGACT 781
BSNT_05527 455 GCAGCTAA 462
||||.|||
RBAM_033440__ 782 GCAGTTAA 789
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