Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_05510 and RBAM_033300

See Amino acid alignment / Visit BSNT_05510 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:00
# Commandline: needle
#    -asequence dna-align/BSNT_05510___ywrA.1.9828.seq
#    -bsequence dna-align/RBAM_033300___ywrA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05510___ywrA-RBAM_033300___ywrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05510___ywrA-RBAM_033300___ywrA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05510___ywrA
# 2: RBAM_033300___ywrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 538
# Identity:     490/538 (91.1%)
# Similarity:   490/538 (91.1%)
# Gaps:           2/538 ( 0.4%)
# Score: 2246.0
# 
#
#=======================================

BSNT_05510___      1 ATGAT-ATCGATCTATTTATTTATGGCGTTTTTTATCGCAAACCTACTGG     49
                     ||||| || |||.|||.|||||||||||||||||.||||||||..|||.|
RBAM_033300__      1 ATGATCAT-GATTTATGTATTTATGGCGTTTTTTGTCGCAAACGCACTCG     49

BSNT_05510___     50 GATATGGCGGCGGACCTGCGTCTATCCCGCTAATGTTTGAAGAAGTCGTA     99
                     |||||||.||||||||.|||||.||||||||.|||||||||||||||||.
RBAM_033300__     50 GATATGGAGGCGGACCGGCGTCAATCCCGCTGATGTTTGAAGAAGTCGTC     99

BSNT_05510___    100 AACAGATACAGCTGGCTCTCAAACGATCAATTCTCAAATATGCTCGCACT    149
                     |||||||||||||||||||||||||||||||||||||||||||||||.||
RBAM_033300__    100 AACAGATACAGCTGGCTCTCAAACGATCAATTCTCAAATATGCTCGCGCT    149

BSNT_05510___    150 TGCGAACGCATTGCCGGGCCCGATCGCCACGAAAATCGCTGCGTATGTCG    199
                     |||||||||||||||.||||||||||||||.||||||||.||||||||||
RBAM_033300__    150 TGCGAACGCATTGCCAGGCCCGATCGCCACCAAAATCGCGGCGTATGTCG    199

BSNT_05510___    200 GCTACAGCGCAGGCGGGTGGCCCGGCTTCCTAATTGCCCTGATCGCAACC    249
                     |||||||||||||||||||||||||.|||||.|||||.||||||||.|||
RBAM_033300__    200 GCTACAGCGCAGGCGGGTGGCCCGGGTTCCTGATTGCGCTGATCGCCACC    249

BSNT_05510___    250 GTCGTACCGTCGGCGCTCGCATTGATCGTCCTGCTGCGCATCATCCAGCG    299
                     ||||||||||||||||||||||||||||||||..||||||||||.|||||
RBAM_033300__    250 GTCGTACCGTCGGCGCTCGCATTGATCGTCCTCTTGCGCATCATTCAGCG    299

BSNT_05510___    300 CTTCCGCCAATCACCTGTCATCAAAGGCATGACGCTGTCCGTCCAGCCTG    349
                     ||||||||||||.||.|||||||||||.||||||||||||||||||||||
RBAM_033300__    300 CTTCCGCCAATCTCCCGTCATCAAAGGTATGACGCTGTCCGTCCAGCCTG    349

BSNT_05510___    350 TCATCGCGGTCATGATGCTCATTCTTACCTGGCAAATCAGCGCAGACGGC    399
                     |||||||.||||||||||||||||||||||||||||||.||||||||.||
RBAM_033300__    350 TCATCGCCGTCATGATGCTCATTCTTACCTGGCAAATCGGCGCAGACAGC    399

BSNT_05510___    400 ATCAAAGCGATCGGCTGGATCCAATCGATCGTGATTGCGGGAATTTCGCT    449
                     ||||||||||||||||||.|.|||.||||.|||||||||||.|||||.||
RBAM_033300__    400 ATCAAAGCGATCGGCTGGGTTCAAGCGATAGTGATTGCGGGGATTTCCCT    449

BSNT_05510___    450 CCTTGCCATGACAAAATTCAAAATGCATCCGGCATTTTTGATTATCGCGG    499
                     |||||||.|||||||||||||.|||||||||||.||..||||||||||||
RBAM_033300__    450 CCTTGCCTTGACAAAATTCAAGATGCATCCGGCCTTCCTGATTATCGCGG    499

BSNT_05510___    500 CGTTTTTATATGGGGGCCTTGTGATCCCTCATTTTTAG    537
                     |||||||.|||||.||.||||||.|.||||||||.||.
RBAM_033300__    500 CGTTTTTGTATGGAGGGCTTGTGGTTCCTCATTTATAA    537


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.