Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05506 and RBAM_033270
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:59
# Commandline: needle
# -asequence dna-align/BSNT_05506___ywrD.1.9828.seq
# -bsequence dna-align/RBAM_033270___ywrD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05506___ywrD-RBAM_033270___ywrD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05506___ywrD-RBAM_033270___ywrD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05506___ywrD
# 2: RBAM_033270___ywrD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1598
# Identity: 1173/1598 (73.4%)
# Similarity: 1173/1598 (73.4%)
# Gaps: 40/1598 ( 2.5%)
# Score: 4143.5
#
#
#=======================================
BSNT_05506___ 1 ATGAACAGATCTGTCATCGGTACAAAGCAAATGGTCGTCAGTCCGCATTA 50
|||||.|..||...||||||.||.||.|||||||||||||||||||||||
RBAM_033270__ 1 ATGAATACTTCAACCATCGGAACGAAACAAATGGTCGTCAGTCCGCATTA 50
BSNT_05506___ 51 CCTCGCTTCTCAAGCCGGAAACCGCATACTAGACAAGGGAGGCAACGCGT 100
.|||||||||||.||.||...|.||||.||.||.|||||.||.|||||||
RBAM_033270__ 51 TCTCGCTTCTCAGGCAGGGGCCGGCATTCTGGAAAAGGGCGGAAACGCGT 100
BSNT_05506___ 101 TTGACGCTGCTGTTGCGGTGAGTGCTTGTCTTGCGGTTGTGTATCCGCAT 150
||||.||.||.||.|||||.||.||.|||||.||.||.||||||||||||
RBAM_033270__ 101 TTGATGCGGCAGTGGCGGTCAGCGCCTGTCTGGCAGTCGTGTATCCGCAT 150
BSNT_05506___ 151 ATGACCGGACTTGGCGGGGATTCCTTTTGGCTAACCTTTCACCAGGAAAC 200
|||||.||.||||||||||||||.||||||||.|| |.|||| .|||.
RBAM_033270__ 151 ATGACGGGCCTTGGCGGGGATTCATTTTGGCTCAC---TTACCA-TAAAG 196
BSNT_05506___ 201 AAAGG----CAGTAAAAGTCTACAATGGCAGCGGCCGTTCAGGAAAAAAC 246
|||.| .|.|.||||..||.||.||.||||||||||||||.||..|.
RBAM_033270__ 197 AAACGGGACGAATCAAAGCTTATAACGGAAGCGGCCGTTCAGGGAAGCAT 246
BSNT_05506___ 247 GTAACGAGAGATGTATATAAGGGAAAAAGCGCGATTCCGCTGCGGGGGAT 296
||.||||||||..|.|||..|||.|.|...|||||.||.|||||.||||.
RBAM_033270__ 247 GTGACGAGAGACTTGTATCGGGGCAGAGAAGCGATCCCTCTGCGCGGGAC 296
BSNT_05506___ 297 TGACAGTGCCATTACCGTGCCGGGAATGGTTGATAGCTGGGATGCGGTCC 346
.||.||.|||||||||||.||||||||||..||.|||||||||||.||.|
RBAM_033270__ 297 AGAAAGCGCCATTACCGTTCCGGGAATGGCGGACAGCTGGGATGCCGTGC 346
BSNT_05506___ 347 TGAAGGAGTACGGGCGTCTGTCTCTTGCAGATGTATTGGAGCCCGCACGC 396
|...||.||||||||||||.||.||.||.||.||..||.||||.||.|..
RBAM_033270__ 347 TTTCGGCGTACGGGCGTCTTTCGCTCGCTGAGGTGCTGAAGCCAGCTCTT 396
BSNT_05506___ 397 GATTATGCCCAAAATGGGTTTCCTGTATCAGCTGATCAGTGTCG-TCACA 445
||||||||...|||.||.|||||.||.||.||.||.||||| || .||||
RBAM_033270__ 397 GATTATGCGGCAAACGGATTTCCGGTGTCCGCCGACCAGTG-CGCCCACA 445
BSNT_05506___ 446 CAGAAAAGAATATTGAATTGCTGGCTTCCACGCCTTACACGGCTGACATC 495
|||||...|||.|.|...|..|.||.||.|.|||||||||..|.|.|||.
RBAM_033270__ 446 CAGAACGCAATCTCGCTCTTTTAGCCTCGATGCCTTACACCTCGGCCATT 495
BSNT_05506___ 496 TTCACGAGAAGGGGCAAAGCACCTGTCCCGGGAGAGCGGTTTTTGCAAAA 545
||.|||||||.....|||||.||..|.||.||.||.||||||.|.|||||
RBAM_033270__ 496 TTTACGAGAAACAAAAAAGCGCCCATGCCCGGTGAACGGTTTGTCCAAAA 545
BSNT_05506___ 546 AGAGCTTGCAGACAGTCTGAATGTGATTGCTGAAAAAGGAAGAAGCGCAT 595
.||.||.||.|.|||..||.|...|.||||.||.|||||.||||||||.|
RBAM_033270__ 546 GGATCTGGCGGCCAGCTTGGAGCAGCTTGCCGAGAAAGGCAGAAGCGCTT 595
BSNT_05506___ 596 TTTATGAAGGAGATCTCGCTCAGCGGATTGTCTCACA-----TTTACAGA 640
|||||||||||||.||||||||.||.| ||||| |||.||.|
RBAM_033270__ 596 TTTATGAAGGAGACCTCGCTCAACGCA-----TCACATCCTTTTTGCAAA 640
BSNT_05506___ 641 ATAACGGCAGTTACATGACAATCGATGATTTTAAAGCGCATCGGGGTGAG 690
|.||||||||.....|||||.|.|||||.||||||||.||.||.||.|||
RBAM_033270__ 641 ACAACGGCAGCCGTCTGACACTTGATGACTTTAAAGCCCACCGCGGCGAG 690
BSNT_05506___ 691 TGGGC-AGCGCCTGTATCAAGTGATTATCGAGGATACAGTGTGTATCAGG 739
|||.| |.| ||.|||||....|||||.||.||.|.||...|.|||||||
RBAM_033270__ 691 TGGACGAAC-CCGGTATCCTCCGATTACCGCGGGTGCAAAATCTATCAGG 739
BSNT_05506___ 740 CGCCGCCGAATTCTCAGGGATTTACCGGTTTATTAACACTGAACATTTTG 789
|.|||||||||||.|||||.|||||.||.|||.|.||.||.||.||.|||
RBAM_033270__ 740 CTCCGCCGAATTCACAGGGCTTTACAGGCTTAATGACGCTCAATATATTG 789
BSNT_05506___ 790 GAAAACTATGATTTCACCCAAATCGAGCACGGTTCATTTGAGTATTATCA 839
||||||||||||||..|.||.|||||.||||||||.|||||.||||||||
RBAM_033270__ 790 GAAAACTATGATTTTTCTCAGATCGAACACGGTTCCTTTGACTATTATCA 839
BSNT_05506___ 840 TGTGCTTGTGGAGGCGTTGAAAAAGAGTTTTGTAGATCGGAATGCCTTTT 889
|.||||..|.||||||.||||.|||||||||.|..|.|||||||...|.|
RBAM_033270__ 840 TCTGCTGATCGAGGCGCTGAAGAAGAGTTTTCTGCACCGGAATGAAGTGT 889
BSNT_05506___ 890 TGACTGACCCTGCGTTTGCTGACATTCCGCTTGAAAGGCTTTTAGATAAA 939
|||||||.||.||.|||.||.|.||||||||.||..||||..|.||||||
RBAM_033270__ 890 TGACTGATCCGGCATTTTCTCATATTCCGCTGGATCGGCTGCTTGATAAA 939
BSNT_05506___ 940 AATTATGCGAAAC-GATTGGCGGGAGAAATCGGCTATC-TGGCAGAACCG 987
...|||||.||.| |.|| ||||.||||||||| ||.| ||||.|..|||
RBAM_033270__ 940 CGGTATGCAAAGCAGCTT-GCGGAAGAAATCGG-TAACGTGGCTGCGCCG 987
BSNT_05506___ 988 GCAGAAAGCAGGCCGGTGGGAAGTGATACGGCATATGCGGCCGTAATCGA 1037
||.|.||||.|||||||.|||||.||.||.||.|||||.|||||...|||
RBAM_033270__ 988 GCGGTAAGCCGGCCGGTCGGAAGCGACACAGCTTATGCCGCCGTCGCCGA 1037
BSNT_05506___ 1038 TGCGGATGGCAACGCAGTGTCATTCATTCAAAGCCTGTACTTTGAATTTG 1087
||||||.||.||.||.||.||.||.|||||.|||||.||.||.||.||.|
RBAM_033270__ 1038 TGCGGAAGGAAATGCCGTTTCCTTTATTCAGAGCCTCTATTTCGAGTTCG 1087
BSNT_05506___ 1088 GCTCGGCAGTCACTGCCGGTGATACAGGCATATTACTGCAAAACCGCGGA 1137
|.||.||.||.||.||.||.||.||.|||||..|.||||||||||||||.
RBAM_033270__ 1088 GATCTGCCGTTACAGCGGGGGAGACGGGCATTCTGCTGCAAAACCGCGGG 1137
BSNT_05506___ 1138 TCATTTTTCTCACTGGATGAAAATCATGTCAACACGCTTGAACCGAGAAA 1187
||||||||.||..||||.|||...||||||||.||.||||||||..|.||
RBAM_033270__ 1138 TCATTTTTTTCGTTGGACGAATCCCATGTCAATACACTTGAACCCGGCAA 1187
BSNT_05506___ 1188 GCGCACCTTCCATACGTTGATGCCGGCTATGGTCTGTAAAGGCGGAAAGC 1237
|||.||.|||||.||..|.||||||||.||||.||||||||..|||||||
RBAM_033270__ 1188 GCGGACGTTCCACACCCTCATGCCGGCGATGGCCTGTAAAGAAGGAAAGC 1237
BSNT_05506___ 1238 CAAAAATTCTGTACGGCACACAAGGCGGCGAAGGCCAGCCGCAGACCCAG 1287
|..|.||.||||||||.||.||.||.||.||||||||||||||.||.|||
RBAM_033270__ 1238 CTCACATCCTGTACGGAACCCAGGGAGGGGAAGGCCAGCCGCAAACTCAG 1287
BSNT_05506___ 1288 ACGGCCATCATTACCCGAATGCTGGACTACGGAATGCATCCACAGCAGGC 1337
||.||.||.|||||.||.||..|.||.|||..||||.|.||.||||||||
RBAM_033270__ 1288 ACAGCGATGATTACGCGCATCATTGATTACAAAATGGACCCCCAGCAGGC 1337
BSNT_05506___ 1338 AATTAGCGAACCGCGCTGGGTATGGGGCAGAACGTGGGGAGAGGAATACG 1387
.||.|..||.|||||||||||.|||||..|.||.|||||||||||.||.|
RBAM_033270__ 1338 GATCAATGAGCCGCGCTGGGTCTGGGGACGGACATGGGGAGAGGAGTATG 1387
BSNT_05506___ 1388 AAGGTCTCAGAGTCGAGGGCAGATTCA-----CAGACAAAACAATCCAAA 1432
||||.||.||.||.||..|||||.||| .|.||.|.|.||.||
RBAM_033270__ 1388 AAGGGCTGAGGGTTGAAAGCAGAATCAGCCCTGAAACGAGAGAAGCC--- 1434
BSNT_05506___ 1433 AACTGAAAG--ACAGCGGGCATCTCGTGGAGGTTGTCGGTGACTATGATC 1480
|| ||| |.|||||.||.|.|||.|||...||.|||||.|.|||..
RBAM_033270__ 1435 --CT--AAGGCAGAGCGGCCACCGCGTCGAGACCGTTGGTGATTTTGACG 1480
BSNT_05506___ 1481 CGCTGATGGGACAAGCGGCTGCAATCAAAGTTGATGAAGAAGGCTTTCTC 1530
.|||.|||||.||.|||||.||.|||....||||||||||||||||||||
RBAM_033270__ 1481 GGCTTATGGGCCATGCGGCAGCGATCGTCATTGATGAAGAAGGCTTTCTC 1530
BSNT_05506___ 1531 CAAGGCGGAGCCGATCCTCGGGGAGACGGAGCGGCTGTGGGGATATAA 1578
||||||||..||||.||.||.||.|||||||||||.|..||..||||.
RBAM_033270__ 1531 CAAGGCGGGACCGACCCGCGCGGCGACGGAGCGGCCGCAGGAGTATAG 1578
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