Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05506 and RBAM_033270

See Amino acid alignment / Visit BSNT_05506 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:59
# Commandline: needle
#    -asequence dna-align/BSNT_05506___ywrD.1.9828.seq
#    -bsequence dna-align/RBAM_033270___ywrD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05506___ywrD-RBAM_033270___ywrD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05506___ywrD-RBAM_033270___ywrD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05506___ywrD
# 2: RBAM_033270___ywrD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1598
# Identity:    1173/1598 (73.4%)
# Similarity:  1173/1598 (73.4%)
# Gaps:          40/1598 ( 2.5%)
# Score: 4143.5
# 
#
#=======================================

BSNT_05506___      1 ATGAACAGATCTGTCATCGGTACAAAGCAAATGGTCGTCAGTCCGCATTA     50
                     |||||.|..||...||||||.||.||.|||||||||||||||||||||||
RBAM_033270__      1 ATGAATACTTCAACCATCGGAACGAAACAAATGGTCGTCAGTCCGCATTA     50

BSNT_05506___     51 CCTCGCTTCTCAAGCCGGAAACCGCATACTAGACAAGGGAGGCAACGCGT    100
                     .|||||||||||.||.||...|.||||.||.||.|||||.||.|||||||
RBAM_033270__     51 TCTCGCTTCTCAGGCAGGGGCCGGCATTCTGGAAAAGGGCGGAAACGCGT    100

BSNT_05506___    101 TTGACGCTGCTGTTGCGGTGAGTGCTTGTCTTGCGGTTGTGTATCCGCAT    150
                     ||||.||.||.||.|||||.||.||.|||||.||.||.||||||||||||
RBAM_033270__    101 TTGATGCGGCAGTGGCGGTCAGCGCCTGTCTGGCAGTCGTGTATCCGCAT    150

BSNT_05506___    151 ATGACCGGACTTGGCGGGGATTCCTTTTGGCTAACCTTTCACCAGGAAAC    200
                     |||||.||.||||||||||||||.||||||||.||   |.|||| .|||.
RBAM_033270__    151 ATGACGGGCCTTGGCGGGGATTCATTTTGGCTCAC---TTACCA-TAAAG    196

BSNT_05506___    201 AAAGG----CAGTAAAAGTCTACAATGGCAGCGGCCGTTCAGGAAAAAAC    246
                     |||.|    .|.|.||||..||.||.||.||||||||||||||.||..|.
RBAM_033270__    197 AAACGGGACGAATCAAAGCTTATAACGGAAGCGGCCGTTCAGGGAAGCAT    246

BSNT_05506___    247 GTAACGAGAGATGTATATAAGGGAAAAAGCGCGATTCCGCTGCGGGGGAT    296
                     ||.||||||||..|.|||..|||.|.|...|||||.||.|||||.||||.
RBAM_033270__    247 GTGACGAGAGACTTGTATCGGGGCAGAGAAGCGATCCCTCTGCGCGGGAC    296

BSNT_05506___    297 TGACAGTGCCATTACCGTGCCGGGAATGGTTGATAGCTGGGATGCGGTCC    346
                     .||.||.|||||||||||.||||||||||..||.|||||||||||.||.|
RBAM_033270__    297 AGAAAGCGCCATTACCGTTCCGGGAATGGCGGACAGCTGGGATGCCGTGC    346

BSNT_05506___    347 TGAAGGAGTACGGGCGTCTGTCTCTTGCAGATGTATTGGAGCCCGCACGC    396
                     |...||.||||||||||||.||.||.||.||.||..||.||||.||.|..
RBAM_033270__    347 TTTCGGCGTACGGGCGTCTTTCGCTCGCTGAGGTGCTGAAGCCAGCTCTT    396

BSNT_05506___    397 GATTATGCCCAAAATGGGTTTCCTGTATCAGCTGATCAGTGTCG-TCACA    445
                     ||||||||...|||.||.|||||.||.||.||.||.||||| || .||||
RBAM_033270__    397 GATTATGCGGCAAACGGATTTCCGGTGTCCGCCGACCAGTG-CGCCCACA    445

BSNT_05506___    446 CAGAAAAGAATATTGAATTGCTGGCTTCCACGCCTTACACGGCTGACATC    495
                     |||||...|||.|.|...|..|.||.||.|.|||||||||..|.|.|||.
RBAM_033270__    446 CAGAACGCAATCTCGCTCTTTTAGCCTCGATGCCTTACACCTCGGCCATT    495

BSNT_05506___    496 TTCACGAGAAGGGGCAAAGCACCTGTCCCGGGAGAGCGGTTTTTGCAAAA    545
                     ||.|||||||.....|||||.||..|.||.||.||.||||||.|.|||||
RBAM_033270__    496 TTTACGAGAAACAAAAAAGCGCCCATGCCCGGTGAACGGTTTGTCCAAAA    545

BSNT_05506___    546 AGAGCTTGCAGACAGTCTGAATGTGATTGCTGAAAAAGGAAGAAGCGCAT    595
                     .||.||.||.|.|||..||.|...|.||||.||.|||||.||||||||.|
RBAM_033270__    546 GGATCTGGCGGCCAGCTTGGAGCAGCTTGCCGAGAAAGGCAGAAGCGCTT    595

BSNT_05506___    596 TTTATGAAGGAGATCTCGCTCAGCGGATTGTCTCACA-----TTTACAGA    640
                     |||||||||||||.||||||||.||.|     |||||     |||.||.|
RBAM_033270__    596 TTTATGAAGGAGACCTCGCTCAACGCA-----TCACATCCTTTTTGCAAA    640

BSNT_05506___    641 ATAACGGCAGTTACATGACAATCGATGATTTTAAAGCGCATCGGGGTGAG    690
                     |.||||||||.....|||||.|.|||||.||||||||.||.||.||.|||
RBAM_033270__    641 ACAACGGCAGCCGTCTGACACTTGATGACTTTAAAGCCCACCGCGGCGAG    690

BSNT_05506___    691 TGGGC-AGCGCCTGTATCAAGTGATTATCGAGGATACAGTGTGTATCAGG    739
                     |||.| |.| ||.|||||....|||||.||.||.|.||...|.|||||||
RBAM_033270__    691 TGGACGAAC-CCGGTATCCTCCGATTACCGCGGGTGCAAAATCTATCAGG    739

BSNT_05506___    740 CGCCGCCGAATTCTCAGGGATTTACCGGTTTATTAACACTGAACATTTTG    789
                     |.|||||||||||.|||||.|||||.||.|||.|.||.||.||.||.|||
RBAM_033270__    740 CTCCGCCGAATTCACAGGGCTTTACAGGCTTAATGACGCTCAATATATTG    789

BSNT_05506___    790 GAAAACTATGATTTCACCCAAATCGAGCACGGTTCATTTGAGTATTATCA    839
                     ||||||||||||||..|.||.|||||.||||||||.|||||.||||||||
RBAM_033270__    790 GAAAACTATGATTTTTCTCAGATCGAACACGGTTCCTTTGACTATTATCA    839

BSNT_05506___    840 TGTGCTTGTGGAGGCGTTGAAAAAGAGTTTTGTAGATCGGAATGCCTTTT    889
                     |.||||..|.||||||.||||.|||||||||.|..|.|||||||...|.|
RBAM_033270__    840 TCTGCTGATCGAGGCGCTGAAGAAGAGTTTTCTGCACCGGAATGAAGTGT    889

BSNT_05506___    890 TGACTGACCCTGCGTTTGCTGACATTCCGCTTGAAAGGCTTTTAGATAAA    939
                     |||||||.||.||.|||.||.|.||||||||.||..||||..|.||||||
RBAM_033270__    890 TGACTGATCCGGCATTTTCTCATATTCCGCTGGATCGGCTGCTTGATAAA    939

BSNT_05506___    940 AATTATGCGAAAC-GATTGGCGGGAGAAATCGGCTATC-TGGCAGAACCG    987
                     ...|||||.||.| |.|| ||||.||||||||| ||.| ||||.|..|||
RBAM_033270__    940 CGGTATGCAAAGCAGCTT-GCGGAAGAAATCGG-TAACGTGGCTGCGCCG    987

BSNT_05506___    988 GCAGAAAGCAGGCCGGTGGGAAGTGATACGGCATATGCGGCCGTAATCGA   1037
                     ||.|.||||.|||||||.|||||.||.||.||.|||||.|||||...|||
RBAM_033270__    988 GCGGTAAGCCGGCCGGTCGGAAGCGACACAGCTTATGCCGCCGTCGCCGA   1037

BSNT_05506___   1038 TGCGGATGGCAACGCAGTGTCATTCATTCAAAGCCTGTACTTTGAATTTG   1087
                     ||||||.||.||.||.||.||.||.|||||.|||||.||.||.||.||.|
RBAM_033270__   1038 TGCGGAAGGAAATGCCGTTTCCTTTATTCAGAGCCTCTATTTCGAGTTCG   1087

BSNT_05506___   1088 GCTCGGCAGTCACTGCCGGTGATACAGGCATATTACTGCAAAACCGCGGA   1137
                     |.||.||.||.||.||.||.||.||.|||||..|.||||||||||||||.
RBAM_033270__   1088 GATCTGCCGTTACAGCGGGGGAGACGGGCATTCTGCTGCAAAACCGCGGG   1137

BSNT_05506___   1138 TCATTTTTCTCACTGGATGAAAATCATGTCAACACGCTTGAACCGAGAAA   1187
                     ||||||||.||..||||.|||...||||||||.||.||||||||..|.||
RBAM_033270__   1138 TCATTTTTTTCGTTGGACGAATCCCATGTCAATACACTTGAACCCGGCAA   1187

BSNT_05506___   1188 GCGCACCTTCCATACGTTGATGCCGGCTATGGTCTGTAAAGGCGGAAAGC   1237
                     |||.||.|||||.||..|.||||||||.||||.||||||||..|||||||
RBAM_033270__   1188 GCGGACGTTCCACACCCTCATGCCGGCGATGGCCTGTAAAGAAGGAAAGC   1237

BSNT_05506___   1238 CAAAAATTCTGTACGGCACACAAGGCGGCGAAGGCCAGCCGCAGACCCAG   1287
                     |..|.||.||||||||.||.||.||.||.||||||||||||||.||.|||
RBAM_033270__   1238 CTCACATCCTGTACGGAACCCAGGGAGGGGAAGGCCAGCCGCAAACTCAG   1287

BSNT_05506___   1288 ACGGCCATCATTACCCGAATGCTGGACTACGGAATGCATCCACAGCAGGC   1337
                     ||.||.||.|||||.||.||..|.||.|||..||||.|.||.||||||||
RBAM_033270__   1288 ACAGCGATGATTACGCGCATCATTGATTACAAAATGGACCCCCAGCAGGC   1337

BSNT_05506___   1338 AATTAGCGAACCGCGCTGGGTATGGGGCAGAACGTGGGGAGAGGAATACG   1387
                     .||.|..||.|||||||||||.|||||..|.||.|||||||||||.||.|
RBAM_033270__   1338 GATCAATGAGCCGCGCTGGGTCTGGGGACGGACATGGGGAGAGGAGTATG   1387

BSNT_05506___   1388 AAGGTCTCAGAGTCGAGGGCAGATTCA-----CAGACAAAACAATCCAAA   1432
                     ||||.||.||.||.||..|||||.|||     .|.||.|.|.||.||   
RBAM_033270__   1388 AAGGGCTGAGGGTTGAAAGCAGAATCAGCCCTGAAACGAGAGAAGCC---   1434

BSNT_05506___   1433 AACTGAAAG--ACAGCGGGCATCTCGTGGAGGTTGTCGGTGACTATGATC   1480
                       ||  |||  |.|||||.||.|.|||.|||...||.|||||.|.|||..
RBAM_033270__   1435 --CT--AAGGCAGAGCGGCCACCGCGTCGAGACCGTTGGTGATTTTGACG   1480

BSNT_05506___   1481 CGCTGATGGGACAAGCGGCTGCAATCAAAGTTGATGAAGAAGGCTTTCTC   1530
                     .|||.|||||.||.|||||.||.|||....||||||||||||||||||||
RBAM_033270__   1481 GGCTTATGGGCCATGCGGCAGCGATCGTCATTGATGAAGAAGGCTTTCTC   1530

BSNT_05506___   1531 CAAGGCGGAGCCGATCCTCGGGGAGACGGAGCGGCTGTGGGGATATAA   1578
                     ||||||||..||||.||.||.||.|||||||||||.|..||..||||.
RBAM_033270__   1531 CAAGGCGGGACCGACCCGCGCGGCGACGGAGCGGCCGCAGGAGTATAG   1578


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