Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05495 and RBAM_033200
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:59
# Commandline: needle
# -asequence dna-align/BSNT_05495___ywrJ.1.9828.seq
# -bsequence dna-align/RBAM_033200___ywrJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05495___ywrJ-RBAM_033200___ywrJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05495___ywrJ-RBAM_033200___ywrJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05495___ywrJ
# 2: RBAM_033200___ywrJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 717
# Identity: 470/717 (65.6%)
# Similarity: 470/717 (65.6%)
# Gaps: 81/717 (11.3%)
# Score: 1372.0
#
#
#=======================================
BSNT_05495___ 1 GTGAAAGGTTTGAATCA----ATTCCT---TAACACA----GATGTTGAG 39
|.||.|.||.|.| |||.|| ||| ||| |||.|||||
RBAM_033200__ 1 ----ATGGCTGGATTAAGCAGATTTCTGGATAA-ACAAGTCGATATTGAG 45
BSNT_05495___ 40 GTTGTCATTTCAGGAGATACAAGGTTTGTC-GGCACCCTCATAGATATCG 88
||.||.||..||||.|..||| || ||.||.||..|.|||||||
RBAM_033200__ 46 ------ATATCGGGGAATACGACATTT-TCAGGAACTCTTTTGGATATCG 88
BSNT_05495___ 89 GACAGGATATTTTTGTTATTTTTGATGGCTGCAATTATCTTTATATTCCC 138
|.||||||||..||||.|||..|||.|||.|.|..|.||||||||||||.
RBAM_033200__ 89 GTCAGGATATCATTGTGATTCATGACGGCCGGACGTTTCTTTATATTCCG 138
BSNT_05495___ 139 TTGTTGCATCTTC-----ATCAAATAAAC--------AAGGCGAAAATAA 175
.||.||||||||| ||.|.||..|| |.|..||.|||||
RBAM_033200__ 139 CTGCTGCATCTTCAGAGGATGACATTGACGCTCCCGGACGAAGAGAATAA 188
BSNT_05495___ 176 TGACCAGTACTGAGAAGCCATTTTTGATCAA----TCCGGAAGATCCAAT 221
.||.|.|||| ||.| ||..|| |||| .|||| .
RBAM_033200__ 189 AGAACCGTAC------GCAA-----GAAAAAAAAGTCCG---CATCC--C 222
BSNT_05495___ 222 GATAGAGGCAGAAACTCTAGCTTTTTCATATAGAAATACATTAAACAAGG 271
||.|.| |||.|||..| |.|||||.|||.|.|||||..|..|..|..
RBAM_033200__ 223 GAAAAA--CAGGAACATT--CCTTTTCTTATCGGAATACCCTCCAGCATA 268
BSNT_05495___ 272 TCAAAGGCCAG-TTTATTGAAGTTTATGTAACTGGGGGTCGATCGATCCA 320
|.||||| ||| ||.|..|||.|.|.|||.||.||.|..||.||.||.||
RBAM_033200__ 269 TAAAAGG-CAGATTCACAGAAATATTTGTTACGGGAGACCGTTCCATTCA 317
BSNT_05495___ 321 TGGGTATGTTACAAATGTTTTAAACGATTATATTGTATTTTTCTCACCCG 370
|||||||||.||||.|||||||||.||||||.||||.||.|||||.||.|
RBAM_033200__ 318 TGGGTATGTGACAAGTGTTTTAAATGATTATTTTGTTTTCTTCTCTCCGG 367
BSNT_05495___ 371 TATTTAAAATACTTTTTATATCTATGCATCATTTAAAATGGTTTACCCCT 420
|.|.|||.|..|||||.||.||.|||||||||||.||||||.|.||.||.
RBAM_033200__ 368 TTTATAAGACTCTTTTCATCTCGATGCATCATTTGAAATGGCTGACACCC 417
BSNT_05495___ 421 TATTCAACTGAACAAACACCGTATACTCTTGACAACTCACAATTGCCGGT 470
|||||...|||.||.||.||||||||..|..|||..|||.|..|||||||
RBAM_033200__ 418 TATTCCGATGAGCAGACGCCGTATACATTAAACAGTTCAGAGCTGCCGGT 467
BSNT_05495___ 471 CGTGCCTTCCAAAGTTCCTCTTGTGCGTAATTTTGAGGAGCAGATCAAAA 520
.||.||..|.||.||.||.|||||.||.|||||||||||||| ||.||||
RBAM_033200__ 468 TGTTCCCGCTAATGTGCCCCTTGTCCGGAATTTTGAGGAGCA-ATTAAAA 516
BSNT_05495___ 521 A-AAATATTGGTGAA-TTGGTCATATTTGATATGGGAGAGGTGCCAGAA- 567
| |.||||.|| ||| .||.|.||..|.|||.|.|||||..|.|| |||
RBAM_033200__ 517 AGATATATCGG-GAAGCTGATTATTCTGGATTTAGGAGATATACC-GAAT 564
BSNT_05495___ 568 AAAGTCGGACTATTAAAGGGTGTCTCTAATAATATCATTGAGCTTATTAA 617
|||||.||.||.||..|||.||||||..|||||||..|||| |||.|
RBAM_033200__ 565 AAAGTGGGGCTGTTGCAGGATGTCTCAGATAATATTCTTGA----ATTGA 610
BSNT_05495___ 618 CGCAAGTGGAGA--GC----CAGTCATTTGGAAGTTAAATCATCTAAAGA 661
| ||| ||.||| || |.||..|||||||.||.||||||.||||.|
RBAM_033200__ 611 C-CAA-TGCAGACGGCGATACTGTTTTTTGGAAATTGAATCATTTAAAAA 658
BSNT_05495___ 662 CAATGCATCTTCCCTAG 678
|.|||||.||.||.||.
RBAM_033200__ 659 CCATGCACCTGCCATAA 675
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