Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05486 and RBAM_033160

See Amino acid alignment / Visit BSNT_05486 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:58
# Commandline: needle
#    -asequence dna-align/BSNT_05486___alsD.1.9828.seq
#    -bsequence dna-align/RBAM_033160___alsD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05486___alsD-RBAM_033160___alsD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05486___alsD-RBAM_033160___alsD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05486___alsD
# 2: RBAM_033160___alsD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 771
# Identity:     604/771 (78.3%)
# Similarity:   604/771 (78.3%)
# Gaps:           6/771 ( 0.8%)
# Score: 2316.0
# 
#
#=======================================

BSNT_05486___      1 ATGAAACGAGAAAGCAACATTCAAGTGCTCAGACGCGGTCAAAAA-GATC     49
                     ||||||...|.||||.||||.||..||.|.||.|||||..||||| |.||
RBAM_033160__      1 ATGAAAAACGCAAGCGACATCCATATGATGAGCCGCGGAGAAAAAGGCTC     50

BSNT_05486___     50 AGCCTGTGAGCCAGATTTATCAAGTATCAACAATGACTTCTCTATTAGAC     99
                     | ||||.|...|||||.||||||||.|||||||||||.|||||..|.|||
RBAM_033160__     51 A-CCTGAGGATCAGATCTATCAAGTCTCAACAATGACATCTCTGCTGGAC     99

BSNT_05486___    100 GGAGTATATGACGGAGATTTTGAACTGTCAGAGATTCCGAAATATGGAGA    149
                     |||||||||||||||||||||||..||.|.||.||||||||.|..||.||
RBAM_033160__    100 GGAGTATATGACGGAGATTTTGATATGGCTGACATTCCGAAGTTCGGTGA    149

BSNT_05486___    150 CTTCGGTATCGGAACCTTTAACAAGCTTGACGGAGAGCTGATTGGGTTTG    199
                     .|||||.|||||.||.||.||.||.||.|||||.||..|.||.||.||||
RBAM_033160__    150 TTTCGGAATCGGCACGTTCAATAAACTGGACGGCGAATTAATCGGATTTG    199

BSNT_05486___    200 ACGGCGAATTTTACCGTCTCCGTTCAGACGGAACCGCGACACCGGTCCAA    249
                     ||||.||||||||||||||.||....||||||||.||.||.||.||..||
RBAM_033160__    200 ACGGAGAATTTTACCGTCTGCGCGGCGACGGAACGGCTACGCCTGTTAAA    249

BSNT_05486___    250 AACGGGGATCGTTCTCCGTTCTGTTCATTTACGTTCTTTACACCGGACAT    299
                     ..|||.||.|..||.||.|||||.|||||.||.||.||.||.|||||.||
RBAM_033160__    250 GGCGGAGACCTGTCACCATTCTGCTCATTCACATTTTTCACGCCGGATAT    299

BSNT_05486___    300 GACGCACAAAATTGA-TGCGAAAATGACACGCGAAGACTTTGAAAAAGAG    348
                     ||||||.|..||.|| .||| |||||||.||.|||||.||.||..|.||.
RBAM_033160__    300 GACGCATACGATCGACGGCG-AAATGACCCGTGAAGAATTCGAGCAGGAA    348

BSNT_05486___    349 ATCAACAGCATGCTGCCAAGCAGAAACTTATTTTATGCAATTCGTATTGA    398
                     |||..||||.|.|||||.||.|.|||||||||||||||.||.|||.|.||
RBAM_033160__    349 ATCGCCAGCCTTCTGCCTAGTAAAAACTTATTTTATGCGATCCGTTTGGA    398

BSNT_05486___    399 CGGATTGTTTAAAAAGGTGCAGACAAGAACGGTAGAACTTCAAGAAAAAC    448
                     |||..|.|||||||||||||||||||||||||||||||..||.||.||||
RBAM_033160__    399 CGGCGTATTTAAAAAGGTGCAGACAAGAACGGTAGAACGCCAGGAGAAAC    448

BSNT_05486___    449 CTTACGTGCCAATGGTTGAAGCGGTCAAAACACAGCCGATTTTCAACTTC    498
                     |.|||||.||.|||.|.||||||||.|||||||||||..|.||||||||.
RBAM_033160__    449 CGTACGTTCCGATGATCGAAGCGGTAAAAACACAGCCTGTGTTCAACTTT    498

BSNT_05486___    499 GACAAC-GTGAGAGGAACAATCGTAGGTTTCTTGACACCAGCTTATGCAA    547
                     |||.|| .|.|| ||.|||||||..||.||||.|||.||.|.|||.||||
RBAM_033160__    499 GACGACATTCAG-GGTACAATCGCCGGCTTCTGGACGCCGGGTTACGCAA    547

BSNT_05486___    548 ACGGAATCGCCGTTTCAGGCTATCACCTGCACTTCATTGACGAAGGACGC    597
                     ||||.|||||.|||||.||.||||||||||||||||||||.|||||||||
RBAM_033160__    548 ACGGCATCGCTGTTTCCGGATATCACCTGCACTTCATTGATGAAGGACGC    597

BSNT_05486___    598 AATTCAGGCGGACACGTTTTTGACTATGTGCTTGAGGATTGCACGGTTAC    647
                     |||||.|||||||||||.|||||||||||..||.|.|||||.|..||.||
RBAM_033160__    598 AATTCCGGCGGACACGTATTTGACTATGTCATTAAAGATTGTAAAGTGAC    647

BSNT_05486___    648 GATTTCTCAAAAAATGAACATGAATCTCAGACTTCCGAACACAGCGGATT    697
                     ||||||||||||||||||.|||||.||||..||||||||.||.|||||.|
RBAM_033160__    648 GATTTCTCAAAAAATGAATATGAACCTCAAGCTTCCGAATACGGCGGACT    697

BSNT_05486___    698 TCTTTAATGCGAATCTGGATAACCCTGATTTTGCGAAAGATATCGAAACA    747
                     |.||.||.||.|||.|.|||||.||..||||||||||.||||||||||||
RBAM_033160__    698 TTTTCAACGCAAATTTAGATAATCCGAATTTTGCGAAGGATATCGAAACA    747

BSNT_05486___    748 ACTGAAGGAAGCCCTGAATAA    768
                     ||.|||||||||||.||||||
RBAM_033160__    748 ACCGAAGGAAGCCCGGAATAA    768


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