Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_05475 and RBAM_033090

See Amino acid alignment / Visit BSNT_05475 in genome browser / Return to Orthologue table 
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:58
# Commandline: needle
#    -asequence dna-align/BSNT_05475___rbsK.1.9828.seq
#    -bsequence dna-align/RBAM_033090___rbsK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05475___rbsK-RBAM_033090___rbsK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05475___rbsK-RBAM_033090___rbsK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05475___rbsK
# 2: RBAM_033090___rbsK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 912
# Identity:     641/912 (70.3%)
# Similarity:   641/912 (70.3%)
# Gaps:          93/912 (10.2%)
# Score: 2225.5
# 
#
#=======================================

BSNT_05475___      1 ---------------------------------ATGGATTTAGTAGTCAC     17
                                                      ||||||.|.||.|||||
RBAM_033090__      1 ATGAGTGAAATTTGTGTTATCGGAAGCTGTTCTATGGATCTGGTCGTCAC     50

BSNT_05475___     18 CTCGGACAAACGCCCAAAAGCCGGTGAAACGGTTCTTGGCAC-GTCATTT     66
                     .||.||....||.||.||||||||||||||.||.||.||||| |.| |||
RBAM_033090__     51 ATCTGAACGGCGTCCGAAAGCCGGTGAAACCGTACTGGGCACAGAC-TTT     99

BSNT_05475___     67 CAGACTGTGCCGGGCGGCAAAGGAGCAAATCAGGCCGTTGCCGCAGCAAG    116
                     ||.||.|||||.||.||.|||||.||||||||||||||.|||||..|..|
RBAM_033090__    100 CAAACCGTGCCCGGAGGAAAAGGCGCAAATCAGGCCGTAGCCGCTTCCCG    149

BSNT_05475___    117 ACTTGGGGCGCAA--GTGTTTATGGTCGGCAAGGTTGGAGACGATCA-TT    163
                     .||  ||||||||  ||.|.||||||.||.||.|..||..|.|| || .|
RBAM_033090__    150 CCT--GGGCGCAAACGTATATATGGTAGGAAAAGCAGGCAATGA-CAGCT    196

BSNT_05475___    164 ATGGAACAGCTA-TATTGAATAATCTCAAAGCTAACGGCGTTTGCACTGA    212
                     |.||||.|||.| ||||||| ||.||.||.||.|||||.||....||.||
RBAM_033090__    197 ACGGAAAAGCGATTATTGAA-AACCTGAAGGCAAACGGTGTCAATACGGA    245

BSNT_05475___    213 CTATATGGAACCGGTTACACATACGGAAAGCGGAACCGCTCATATTGTGC    262
                     |.||||||||.||||||||||||...||||||||||.|||||||||||||
RBAM_033090__    246 CCATATGGAAACGGTTACACATAAAAAAAGCGGAACGGCTCATATTGTGC    295

BSNT_05475___    263 TTGCTGAAGGTGACAACAGCATTGTCGTTGTCAAAGGCGCGAACGATGAC    312
                     |.||.|||||.|||||||||||.|||||.||.||||||||.|||||||||
RBAM_033090__    296 TCGCAGAAGGAGACAACAGCATCGTCGTCGTAAAAGGCGCAAACGATGAC    345

BSNT_05475___    313 ATCACCCCAGCGTATGCGTTAAAA--GCGCTTGAACAGATTGAAAAGGTC    360
                     |||.||||.|..|||||  .||||  |||||.|        .||||..||
RBAM_033090__    346 ATCTCCCCCGATTATGC--CAAAAGTGCGCTAG--------CAAAACTTC    385

BSNT_05475___    361 --------GATATGGTGCTGATTCAGCAGGAAATCCCAGAAGAAACGGTT    402
                             |||||.||||||||.||||||||.||.||.||||||||.|||
RBAM_033090__    386 CCGGCATTGATATCGTGCTGATCCAGCAGGAGATTCCTGAAGAAACCGTT    435

BSNT_05475___    403 GATGAGGTGTGCAAATACTGCCATTCTCTCG----ATATCCCGATCATGC    448
                     ||.||.|||||||..||||||    |.|.||    |.||.|||.|.||.|
RBAM_033090__    436 GAAGAAGTGTGCAGCTACTGC----CGCGCGCAGCAAATTCCGGTTATCC    481

BSNT_05475___    449 TAAACCCGGCACCGGCCCGCCCGCTCAAGCAGGAAACCATTGATCACGCC    498
                     |.||.||.||.||||||||.|||||.||.||....||.|||||..|.|||
RBAM_033090__    482 TGAATCCCGCGCCGGCCCGGCCGCTGAAACAATCGACGATTGAGGATGCC    531

BSNT_05475___    499 ACCTATCTGACGCCGAATGAACACGAGTCTTCGATTTTATTCCCTGATCT    548
                     .|.|||||.||||||||.|||||.||..|.||.||||||||.|||||.|.
RBAM_033090__    532 GCATATCTTACGCCGAACGAACATGAAGCGTCCATTTTATTTCCTGACCG    581

BSNT_05475___    549 TACCACTTCTGAAGCTCTGGC--GCTTTAT-CCGGCAAAGCTCTTTATTA    595
                     .||.|.....|||||.||.||  ||  ||| |||||||| ||.||.||||
RBAM_033090__    582 GACGAAAGAAGAAGCGCTCGCCGGC--TATCCCGGCAAA-CTGTTCATTA    628

BSNT_05475___    596 CGGAAGGAAAACAAGGCGTCCGCTATTCGGCTGGCAGCAAAGAAGTGCTC    645
                     |.|||||||||||||||||.|||||.||.|..||||.|...|||..|||.
RBAM_033090__    629 CCGAAGGAAAACAAGGCGTGCGCTACTCAGACGGCACCGCCGAACGGCTT    678

BSNT_05475___    646 A-TCCCGTCCTTCCCTGTTGAGCCCGTTGATACAACCGGAGCCGGTGATA    694
                     | ||||| |||||||||..||..|.||.||.||.||.||||||||.||||
RBAM_033090__    679 ATTCCCG-CCTTCCCTGCAGAAGCGGTCGACACGACAGGAGCCGGCGATA    727

BSNT_05475___    695 CGTTTAACGCAGCATTTGCCGTGGCCCTGGCTGAGGGAAAAGATATTGAA    744
                     |.|||||.||||||.|||||||.||.||.||.||.||....||.|||| |
RBAM_033090__    728 CCTTTAATGCAGCACTTGCCGTCGCACTCGCGGAAGGGCGGGACATTG-A    776

BSNT_05475___    745 GC---CGCATTGCGGTTTGCCAATCGAGCGGCTTCCCTTTCTGTCTGTTC    791
                     ||   |||  |.|.|||||||||.||.||.||.|||    |||||.||.|
RBAM_033090__    777 GCAAGCGC--TCCTGTTTGCCAACCGCGCCGCCTCC----CTGTCCGTGC    820

BSNT_05475___    792 ----CTTCGGTGCCCAAGGCGGAATGCCGACAAGAAATGAAGTAGAGGAG    837
                         ||||||.|||||||||||.||||||.|.|||||.|||||.||||||
RBAM_033090__    821 AGCACTTCGGCGCCCAAGGCGGCATGCCGGCCAGAAAAGAAGTTGAGGAG    870

BSNT_05475___    838 CTGCTGTCATGA    849
                     ||||||||||||
RBAM_033090__    871 CTGCTGTCATGA    882


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.