Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_05455 and RBAM_032890

See Amino acid alignment / Visit BSNT_05455 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:55
# Commandline: needle
#    -asequence dna-align/BSNT_05455___tagB.1.9828.seq
#    -bsequence dna-align/RBAM_032890___tagB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05455___tagB-RBAM_032890___tagB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05455___tagB-RBAM_032890___tagB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05455___tagB
# 2: RBAM_032890___tagB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1305
# Identity:     763/1305 (58.5%)
# Similarity:   763/1305 (58.5%)
# Gaps:         279/1305 (21.4%)
# Score: 1999.5
# 
#
#=======================================

BSNT_05455___      1 ATGAATATACGTTCTTTATT----GGTTATGATT---------------T     31
                     |||||..|.||.||||||||    |.||.|.|||               |
RBAM_032890__      1 ATGAACTTGCGATCTTTATTCGCCGCTTTTTATTCTATATATCTGTCTAT     50

BSNT_05455___     32 ACTCGGCCGGTCTCGCTTTGACCGGTTTTATTTTCAGAAG--GGTAAAAG     79
                     .||||||                 |||||.||    .|||  .|||||  
RBAM_032890__     51 TCTCGGC-----------------GTTTTGTT----CAAGCCTGTAAA--     77

BSNT_05455___     80 CTCGCGATAGAGCTGTAT-----TGCTTGCTTCCTTTCCGGATAATGCGC    124
                        ||...|||.|..|.|     ||||.|..||.|||...||.|||||||
RBAM_032890__     78 ---GCCCAAGAACCATCTGACCCTGCTGGTATCTTTTGAAGAGAATGCGC    124

BSNT_05455___    125 GCGAGCTGCT-TGATGAGTATGTC------AGCAGCA-----ACTGGC--    160
                        ||  ||| |.||..||   ||      ||| |||     |.|.||  
RBAM_032890__    125 ---AG--GCTCTCATCCGT---TCTTACAAAGC-GCACGCTGAATCGCTT    165

BSNT_05455___    161 -CGTTTGAAATGGAAGTCCTTT-TA-ACAAGGCACGCCGTTTCCCTTGCA    207
                      |.|.|||||||...||  ||| || ||.||.||.|||||        ||
RBAM_032890__    166 TCTTATGAAATGACGGT--TTTGTATACGAGACATGCCGT--------CA    205

BSNT_05455___    208 G-ATGAA---------------TATC--CTTCTGTTCGATCGCAAATAAT    239
                     | .||||               ||||  ||..|.||  |||        |
RBAM_032890__    206 GTCTGAAAAAAGAGCTGGAAGGTATCGGCTCTTTTT--ATC--------T    245

BSNT_05455___    240 CAACGAGAAAAATCCGATTCATCTCATTAAAGCCGTATACCTGA---TGT    286
                     .|||||.|||.|||||.|.|||||..|.||.||.||.|   |||   |.|
RBAM_032890__    246 GAACGAAAAACATCCGCTGCATCTTTTGAAGGCTGTTT---TGATCCTTT    292

BSNT_05455___    287 TTAGGTGTAAATTTGTGTTAACGGATAATTATTTTCTGCTGACAAGTGTT    336
                     |||.|.|.|||.|.|||.||||||||||.|||||.||..|||||||.||.
RBAM_032890__    293 TTAAGAGCAAAGTGGTGATAACGGATAACTATTTCCTCATGACAAGCGTC    342

BSNT_05455___    337 TTGAATAAA----CGTCCTCAGACGACATGCATTCAAATTTGGCATGCGT    382
                     |    ||||    ||.||.||.||||||||||||||..|.|||||||||.
RBAM_032890__    343 T----TAAACCGCCGGCCGCAAACGACATGCATTCAGGTGTGGCATGCGA    388

BSNT_05455___    383 CCGGCGCTTTGAAGAAGTTTGGACTCGAGGAT-------ATCGGAAACCG    425
                     .||||.|||||||.|||||.||.||.||||||       ||| .||||||
RBAM_032890__    389 ACGGCTCTTTGAAAAAGTTCGGCCTTGAGGATGTGACGAATC-AAAACCG    437

BSNT_05455___    426 CTATCGATCCACCGGG-----GATATCAAACGGTTTAAAAAGGTGTATCG    470
                            |||    ||     |||||||..|||||||||||.|||||.||
RBAM_032890__    438 -------TCC----GGCATCAGATATCAGCCGGTTTAAAAAAGTGTACCG    476

BSNT_05455___    471 TTCGTTTGATCATATCGTTGTCGGCTCTGAAAAAATGGTGGACATTTTCA    520
                     .||||||||...|.||...||||||||.||....||||..|||.||||.|
RBAM_032890__    477 CTCGTTTGACTTTGTCACCGTCGGCTCAGACGCGATGGCTGACGTTTTTA    526

BSNT_05455___    521 AGCGGTCATTCGGAGTGAAAGATGACCGTTTTTTGCGGACGGGTGTTCCG    570
                     |...|||.|||||..|....||.|.||...|.||....||||||||.||.
RBAM_032890__    527 AAAAGTCGTTCGGCATACGGGACGGCCAGCTGTTAAAAACGGGTGTCCCC    576

BSNT_05455___    571 TTAACTGATGAATACTTTCATGTCAAAAGAAAAACAGCTG----------    610
                     .|.|||||.|   .||.|.|||    |||||.|..|||.|          
RBAM_032890__    577 CTGACTGACG---TCTATTATG----AAGAACACAAGCCGGAACTGAAGC    619

BSNT_05455___    611 ---ACCGTCCGAACCAAAAGCTTATTCTGTATGCGCCGACATACAGGGAC    657
                        |..|.||||   ||||..|.||.|||||.||.|||||||.||||||.
RBAM_032890__    620 ACAAATGGCCGA---AAAAAATCATCCTGTACGCACCGACATTCAGGGAT    666

BSNT_05455___    658 TATTGTTTGACGTCCATTCGTCTCCCTTTCTCTAAGGAGCAGCTCTCCAG    707
                     |||..|.||...|||.|.||.||.||.|||.|..|.||.||||||.|   
RBAM_032890__    667 TATGATATGCAATCCTTCCGGCTGCCATTCACCGAAGAACAGCTCAC---    713

BSNT_05455___    708 AGAAC----TGAAGGGAGAATTTTTGCTACTGGTCAAACTACATCCAGCC    753
                      .|||    |.||.|||||.|.|.||||.||.||.||.||.||.||.|||
RBAM_032890__    714 -AAACGCGTTAAACGGAGAGTATATGCTGCTTGTAAAGCTTCACCCTGCC    762

BSNT_05455___    754 GTGCGGAAACAGAT------TACTTTTGAA---GAACACGAAGGGTTGAT    794
                     ||...|.|.|||||      |.|.||||||   ||||         ||||
RBAM_032890__    763 GTTTTGCATCAGATTTCCGCTTCGTTTGAAAGCGAAC---------TGAT    803

BSNT_05455___    795 CAAAGACGTATCAGACGTTCCGTTAAAGAATTTGCTGA----TGGAAAG-    839
                     |||..||||.||.||| .|.|||       .||..|||    |.||||| 
RBAM_032890__    804 CAAGAACGTGTCTGAC-ATGCGT-------CTTCATGATCTCTTGAAAGC    845

BSNT_05455___    840 ---TGACATCCTGATTTCCGACTACTCGTCAGTCGCC-TTTGAGTACGCT    885
                        |||.||..|.|||.|.||.|||||.||.|| ||| |||||.|.|||.
RBAM_032890__    846 GGCTGATATTTTAATTACGGATTACTCTTCCGT-GCCTTTTGAATTCGCG    894

BSNT_05455___    886 TTGTTAAATAAACCGATTTTGTTTTTCACGTATGATATGGCAGAGTATAA    935
                     .|.|||||||||||||||||.|||||||||||||||.|||.|||.|||.|
RBAM_032890__    895 CTCTTAAATAAACCGATTTTCTTTTTCACGTATGATCTGGAAGAATATGA    944

BSNT_05455___    936 TGAAAAACGCGGACTGATCGATGATTTTGAAG-CAGTCATCCCCGGCAGA    984
                     |..|||||||||..|.|||.|..|||.| |.| |.|||||.|||||.|..
RBAM_032890__    945 TCGAAAACGCGGTTTAATCAACAATTAT-ACGTCCGTCATTCCCGGAAAG    993

BSNT_05455___    985 GCCTG-CATGGACACCGAAATGCTGTTGAAAGAAAT-----CAAAGAAAT   1028
                     ||.|| ||| ||||.||||...||..||.|.|||||     .||||..||
RBAM_032890__    994 GCTTGTCAT-GACAGCGAAGCCCTTCTGGAGGAAATGACGAAAAAGCCAT   1042

BSNT_05455___   1029 GTCCGATACAAAGGAAAACTTCAAGAGGTT-TGCGAAAGAGTGGCATCAA   1077
                     .||  .|.||.|.||||   |.|||.|||| |..||.| |.|||.||...
RBAM_032890__   1043 TTC--GTGCAGAAGAAA---TGAAGCGGTTCTCAGACA-AATGGAATATG   1086

BSNT_05455___   1078 TATTCAACAGGTGATGCCAGCATGCGCCTG--------TTGAACTTTATG   1119
                     ||||||      ||||  .|.||.||..||        |||||.|||   
RBAM_032890__   1087 TATTCA------GATG--GGAATTCGAGTGAAGCGTTATTGAAATTT---   1125

BSNT_05455___   1120 AGCGAGCATATGACAGAAAATGAAAA---------AAG-ACCGGCCGGTT   1159
                      ||| |.|    ||| ||||||||||         ||| |||.|||.|. 
RBAM_032890__   1126 -GCG-GAA----ACA-AAAATGAAAAATTGTGCTGAAGCACCTGCCTGA-   1167

BSNT_05455___   1160 CCTAA   1164
                          
RBAM_032890__   1167 -----   1167


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.