Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05455 and RBAM_032890
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:55
# Commandline: needle
# -asequence dna-align/BSNT_05455___tagB.1.9828.seq
# -bsequence dna-align/RBAM_032890___tagB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05455___tagB-RBAM_032890___tagB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05455___tagB-RBAM_032890___tagB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05455___tagB
# 2: RBAM_032890___tagB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1305
# Identity: 763/1305 (58.5%)
# Similarity: 763/1305 (58.5%)
# Gaps: 279/1305 (21.4%)
# Score: 1999.5
#
#
#=======================================
BSNT_05455___ 1 ATGAATATACGTTCTTTATT----GGTTATGATT---------------T 31
|||||..|.||.|||||||| |.||.|.||| |
RBAM_032890__ 1 ATGAACTTGCGATCTTTATTCGCCGCTTTTTATTCTATATATCTGTCTAT 50
BSNT_05455___ 32 ACTCGGCCGGTCTCGCTTTGACCGGTTTTATTTTCAGAAG--GGTAAAAG 79
.|||||| |||||.|| .||| .|||||
RBAM_032890__ 51 TCTCGGC-----------------GTTTTGTT----CAAGCCTGTAAA-- 77
BSNT_05455___ 80 CTCGCGATAGAGCTGTAT-----TGCTTGCTTCCTTTCCGGATAATGCGC 124
||...|||.|..|.| ||||.|..||.|||...||.|||||||
RBAM_032890__ 78 ---GCCCAAGAACCATCTGACCCTGCTGGTATCTTTTGAAGAGAATGCGC 124
BSNT_05455___ 125 GCGAGCTGCT-TGATGAGTATGTC------AGCAGCA-----ACTGGC-- 160
|| ||| |.||..|| || ||| ||| |.|.||
RBAM_032890__ 125 ---AG--GCTCTCATCCGT---TCTTACAAAGC-GCACGCTGAATCGCTT 165
BSNT_05455___ 161 -CGTTTGAAATGGAAGTCCTTT-TA-ACAAGGCACGCCGTTTCCCTTGCA 207
|.|.|||||||...|| ||| || ||.||.||.||||| ||
RBAM_032890__ 166 TCTTATGAAATGACGGT--TTTGTATACGAGACATGCCGT--------CA 205
BSNT_05455___ 208 G-ATGAA---------------TATC--CTTCTGTTCGATCGCAAATAAT 239
| .|||| |||| ||..|.|| ||| |
RBAM_032890__ 206 GTCTGAAAAAAGAGCTGGAAGGTATCGGCTCTTTTT--ATC--------T 245
BSNT_05455___ 240 CAACGAGAAAAATCCGATTCATCTCATTAAAGCCGTATACCTGA---TGT 286
.|||||.|||.|||||.|.|||||..|.||.||.||.| ||| |.|
RBAM_032890__ 246 GAACGAAAAACATCCGCTGCATCTTTTGAAGGCTGTTT---TGATCCTTT 292
BSNT_05455___ 287 TTAGGTGTAAATTTGTGTTAACGGATAATTATTTTCTGCTGACAAGTGTT 336
|||.|.|.|||.|.|||.||||||||||.|||||.||..|||||||.||.
RBAM_032890__ 293 TTAAGAGCAAAGTGGTGATAACGGATAACTATTTCCTCATGACAAGCGTC 342
BSNT_05455___ 337 TTGAATAAA----CGTCCTCAGACGACATGCATTCAAATTTGGCATGCGT 382
| |||| ||.||.||.||||||||||||||..|.|||||||||.
RBAM_032890__ 343 T----TAAACCGCCGGCCGCAAACGACATGCATTCAGGTGTGGCATGCGA 388
BSNT_05455___ 383 CCGGCGCTTTGAAGAAGTTTGGACTCGAGGAT-------ATCGGAAACCG 425
.||||.|||||||.|||||.||.||.|||||| ||| .||||||
RBAM_032890__ 389 ACGGCTCTTTGAAAAAGTTCGGCCTTGAGGATGTGACGAATC-AAAACCG 437
BSNT_05455___ 426 CTATCGATCCACCGGG-----GATATCAAACGGTTTAAAAAGGTGTATCG 470
||| || |||||||..|||||||||||.|||||.||
RBAM_032890__ 438 -------TCC----GGCATCAGATATCAGCCGGTTTAAAAAAGTGTACCG 476
BSNT_05455___ 471 TTCGTTTGATCATATCGTTGTCGGCTCTGAAAAAATGGTGGACATTTTCA 520
.||||||||...|.||...||||||||.||....||||..|||.||||.|
RBAM_032890__ 477 CTCGTTTGACTTTGTCACCGTCGGCTCAGACGCGATGGCTGACGTTTTTA 526
BSNT_05455___ 521 AGCGGTCATTCGGAGTGAAAGATGACCGTTTTTTGCGGACGGGTGTTCCG 570
|...|||.|||||..|....||.|.||...|.||....||||||||.||.
RBAM_032890__ 527 AAAAGTCGTTCGGCATACGGGACGGCCAGCTGTTAAAAACGGGTGTCCCC 576
BSNT_05455___ 571 TTAACTGATGAATACTTTCATGTCAAAAGAAAAACAGCTG---------- 610
.|.|||||.| .||.|.||| |||||.|..|||.|
RBAM_032890__ 577 CTGACTGACG---TCTATTATG----AAGAACACAAGCCGGAACTGAAGC 619
BSNT_05455___ 611 ---ACCGTCCGAACCAAAAGCTTATTCTGTATGCGCCGACATACAGGGAC 657
|..|.|||| ||||..|.||.|||||.||.|||||||.||||||.
RBAM_032890__ 620 ACAAATGGCCGA---AAAAAATCATCCTGTACGCACCGACATTCAGGGAT 666
BSNT_05455___ 658 TATTGTTTGACGTCCATTCGTCTCCCTTTCTCTAAGGAGCAGCTCTCCAG 707
|||..|.||...|||.|.||.||.||.|||.|..|.||.||||||.|
RBAM_032890__ 667 TATGATATGCAATCCTTCCGGCTGCCATTCACCGAAGAACAGCTCAC--- 713
BSNT_05455___ 708 AGAAC----TGAAGGGAGAATTTTTGCTACTGGTCAAACTACATCCAGCC 753
.||| |.||.|||||.|.|.||||.||.||.||.||.||.||.|||
RBAM_032890__ 714 -AAACGCGTTAAACGGAGAGTATATGCTGCTTGTAAAGCTTCACCCTGCC 762
BSNT_05455___ 754 GTGCGGAAACAGAT------TACTTTTGAA---GAACACGAAGGGTTGAT 794
||...|.|.||||| |.|.|||||| |||| ||||
RBAM_032890__ 763 GTTTTGCATCAGATTTCCGCTTCGTTTGAAAGCGAAC---------TGAT 803
BSNT_05455___ 795 CAAAGACGTATCAGACGTTCCGTTAAAGAATTTGCTGA----TGGAAAG- 839
|||..||||.||.||| .|.||| .||..||| |.|||||
RBAM_032890__ 804 CAAGAACGTGTCTGAC-ATGCGT-------CTTCATGATCTCTTGAAAGC 845
BSNT_05455___ 840 ---TGACATCCTGATTTCCGACTACTCGTCAGTCGCC-TTTGAGTACGCT 885
|||.||..|.|||.|.||.|||||.||.|| ||| |||||.|.|||.
RBAM_032890__ 846 GGCTGATATTTTAATTACGGATTACTCTTCCGT-GCCTTTTGAATTCGCG 894
BSNT_05455___ 886 TTGTTAAATAAACCGATTTTGTTTTTCACGTATGATATGGCAGAGTATAA 935
.|.|||||||||||||||||.|||||||||||||||.|||.|||.|||.|
RBAM_032890__ 895 CTCTTAAATAAACCGATTTTCTTTTTCACGTATGATCTGGAAGAATATGA 944
BSNT_05455___ 936 TGAAAAACGCGGACTGATCGATGATTTTGAAG-CAGTCATCCCCGGCAGA 984
|..|||||||||..|.|||.|..|||.| |.| |.|||||.|||||.|..
RBAM_032890__ 945 TCGAAAACGCGGTTTAATCAACAATTAT-ACGTCCGTCATTCCCGGAAAG 993
BSNT_05455___ 985 GCCTG-CATGGACACCGAAATGCTGTTGAAAGAAAT-----CAAAGAAAT 1028
||.|| ||| ||||.||||...||..||.|.||||| .||||..||
RBAM_032890__ 994 GCTTGTCAT-GACAGCGAAGCCCTTCTGGAGGAAATGACGAAAAAGCCAT 1042
BSNT_05455___ 1029 GTCCGATACAAAGGAAAACTTCAAGAGGTT-TGCGAAAGAGTGGCATCAA 1077
.|| .|.||.|.|||| |.|||.|||| |..||.| |.|||.||...
RBAM_032890__ 1043 TTC--GTGCAGAAGAAA---TGAAGCGGTTCTCAGACA-AATGGAATATG 1086
BSNT_05455___ 1078 TATTCAACAGGTGATGCCAGCATGCGCCTG--------TTGAACTTTATG 1119
|||||| |||| .|.||.||..|| |||||.|||
RBAM_032890__ 1087 TATTCA------GATG--GGAATTCGAGTGAAGCGTTATTGAAATTT--- 1125
BSNT_05455___ 1120 AGCGAGCATATGACAGAAAATGAAAA---------AAG-ACCGGCCGGTT 1159
||| |.| ||| |||||||||| ||| |||.|||.|.
RBAM_032890__ 1126 -GCG-GAA----ACA-AAAATGAAAAATTGTGCTGAAGCACCTGCCTGA- 1167
BSNT_05455___ 1160 CCTAA 1164
RBAM_032890__ 1167 ----- 1167
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