Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05454 and RBAM_032880

See Amino acid alignment / Visit BSNT_05454 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:55
# Commandline: needle
#    -asequence dna-align/BSNT_05454___tagA.1.9828.seq
#    -bsequence dna-align/RBAM_032880___tagA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05454___tagA-RBAM_032880___tagA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05454___tagA-RBAM_032880___tagA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05454___tagA
# 2: RBAM_032880___tagA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 826
# Identity:     541/826 (65.5%)
# Similarity:   541/826 (65.5%)
# Gaps:          98/826 (11.9%)
# Score: 1601.5
# 
#
#=======================================

BSNT_05454___      1 ATGCTGCAAACGGAAACGGTTCATCATCTTGCATATGTTAACGGGGATTT     50
                        .||||.||.||||.|||.||..|.|||.|.||||||||.||..||||
RBAM_032880__      1 ---ATGCAGACTGAAATGGTGCACAACCTTTCTTATGTTAATGGAAATTT     47

BSNT_05454___     51 GCCCGGA--TTTTTGAGTCATCTTGA-AGAATCCTT-TATCG----ACCG     92
                      .|.|||  ||.||   ||||.||.| |.|.|..|| |||||    |..|
RBAM_032880__     48 -ACAGGAGTTTATT---TCATATTTAGACACTTATTATATCGCACAAAAG     93

BSNT_05454___     93 CAATGAGGGGGCATTTATCGCAACGGTAAACCCTGAGATCGGGTATGCGG    142
                     |||.|||..|.||||    ||.|||||.||.|||||||||||.||.||.|
RBAM_032880__     94 CAAGGAGCCGTCATT----GCGACGGTCAATCCTGAGATCGGATACGCTG    139

BSNT_05454___    143 CTGCAAAAGACAAGGGTTAT-TTTAAAACAGTTTCATCTGCTGACTTTAT    191
                     |.||.||||||||.|||||| .|.||..|| ||||.||.||.||.||..|
RBAM_032880__    140 CGGCGAAAGACAAAGGTTATCATCAAGTCA-TTTCTTCCGCGGATTTCGT    188

BSNT_05454___    192 CCTGCCTGACGGAATCGGCATCGTCCTGACGTCAAGGCTGA-TCAACAGC    240
                     ||||||.||.||.||||||.||||..|.|.||||.|..||| .||.||.|
RBAM_032880__    189 CCTGCCGGATGGTATCGGCGTCGTGTTAATGTCACGTTTGACGCAGCACC    238

BSNT_05454___    241 AGATTAAAATCGAGGATCGCGGGGTACGATGTATTTATCAACCTTCTCGG    290
                     .| .|.|||||.||.||.|||||.|.||||||.|||.|....||.|||||
RBAM_032880__    239 CG-CTGAAATCAAGAATTGCGGGATTCGATGTGTTTCTTGCGCTGCTCGG    287

BSNT_05454___    291 CCTGGCTGACCG-----CAAAAAGAAAAGGGTATTTTTATACGGGGCCAA    335
                     |||.||..||||     |.||||.||     |||||||||||||.||.||
RBAM_032880__    288 CCTCGCAAACCGGCAGTCTAAAAAAA-----TATTTTTATACGGAGCTAA    332

BSNT_05454___    336 ACAAGAGATTATTCAAGCTGTT-----GCAGATCGGCTTTCAACCGAATA    380
                     .|||||..|..||.|.||.|||     .|.||||.||     |..||.||
RBAM_032880__    333 GCAAGACGTGCTTGACGCCGTTTTGAACCGGATCAGC-----AAAGAGTA    377

BSNT_05454___    381 TCCCGGA--ATTGAGCTAGCCGGATACTCGC-----ACGGCTATGTCAAA    423
                     |||  ||  ||||||.|.|.||||     ||     ||||.||||   ||
RBAM_032880__    378 TCC--GAATATTGAGGTTGTCGGA-----GCCAGCAACGGTTATG---AA    417

BSNT_05454___    424 ---GACAAAGACGAAGTTGCGAAGCAAA--TCGCGGCTGCCAAGCCTGAC    468
                        ||.|||..|...||.||.||.||.|  ||.|||  ||.||.||.||.
RBAM_032880__    418 GCGGATAAACGCTTCGTCGCCAAACAGATTTCCCGG--GCGAAACCCGAT    465

BSNT_05454___    469 ATGGTTTTTGTGGCTCTCGGATATCCTCATCAGGAGAAGTTTATTTATGA    518
                     .|.||.|||||.||..|.||||||||.||||||||..|.|||||||||||
RBAM_032880__    466 CTCGTGTTTGTCGCCTTAGGATATCCCCATCAGGAACAATTTATTTATGA    515

BSNT_05454___    519 ACATAAGCATCTATTTCCTCAGGCGATTGCGATCGGCATCGGCGGGAGCT    568
                     |.|.||.|||||.||.||||||||..|..|||||||..|.|||||.||||
RBAM_032880__    516 ATACAAACATCTTTTCCCTCAGGCTGTATCGATCGGTTTGGGCGGAAGCT    565

BSNT_05454___    569 TCGACGTTTTCAGCGGAAAAGTGAAAAGAGCGCCGAAA---ATATTCATT    615
                     |.||.||.||||||||||..||||||.|.||.||..||   ||..|||..
RBAM_032880__    566 TTGATGTGTTCAGCGGAACGGTGAAACGCGCCCCTGAATGGATGATCAAA    615

BSNT_05454___    616 AAGCTTAATCTTGAATGGATGTACCGCCTGCTAACCAATCCGACAAGGTG    665
                     |.|   |||||.||||||.|||||.|.|||.|.||.||||||...||.||
RBAM_032880__    616 ACG---AATCTGGAATGGCTGTACAGACTGTTGACGAATCCGTGGAGATG    662

BSNT_05454___    666 GAAGCGGATGCTGAACATCCCGAAATATGTCTTTT-CCGTTCTGAAAGAG    714
                     |||..|||||||||||||.|||||.|||| ||||| |||||.|||     
RBAM_032880__    663 GAAAAGGATGCTGAACATTCCGAAGTATG-CTTTTACCGTTTTGA-----    706

BSNT_05454___    715 GAAAGAGT---TCAAA-AACAG-CGGCACTACTATCCGG-AGCAGATCAA    758
                     ||||.|.|   ||||| ||.|| |.|.|.|.|.|.|.|| ||.|||||||
RBAM_032880__    707 GAAATAATAAATCAAATAAAAGCCTGTATTCCAAGCAGGCAGAAGATCAA    756

BSNT_05454___    759 A-GAACAATCTAAAATCGATGTGTAG    783
                     | |||..|.||..||           
RBAM_032880__    757 ACGAAACAGCTTTAA-----------    771


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05454 and RBAM_032880

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
