Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05453 and RBAM_032870

See Amino acid alignment / Visit BSNT_05453 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:55
# Commandline: needle
#    -asequence dna-align/BSNT_05453___tagD.1.9828.seq
#    -bsequence dna-align/RBAM_032870___tagD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05453___tagD-RBAM_032870___tagD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05453___tagD-RBAM_032870___tagD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05453___tagD
# 2: RBAM_032870___tagD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 404
# Identity:     302/404 (74.8%)
# Similarity:   302/404 (74.8%)
# Gaps:          22/404 ( 5.4%)
# Score: 1134.5
# 
#
#=======================================

BSNT_05453___      1 ATGACAATGAAGAAAGTCATCACATACGGAACGTTTGATTTATTACATTG     50
                           ||||||||.|||||.||.|||||.||||||||||||.|.|||||
RBAM_032870__      1 ------ATGAAGAAGGTCATTACTTACGGTACGTTTGATTTACTGCATTG     44

BSNT_05453___     51 GGGACATATCAAGTTATTGGAACGGGCAAAACAATTGGGGGACTATTTAG    100
                     |||.|||||.||..|..|.||.||.|||||.||..|.||.||.||..|.|
RBAM_032870__     45 GGGTCATATTAAACTGCTTGAGCGCGCAAAGCAGCTTGGAGATTACCTTG     94

BSNT_05453___    101 TTGTAGCGATTTCGACTGACGAATTCAATCTTCAAAAGCAGAAAAAAGCA    150
                     ||||.||.||.||.||.|||||.|||||.||.|||||.||.|||||.||.
RBAM_032870__     95 TTGTTGCCATCTCAACAGACGAGTTCAACCTGCAAAAACAAAAAAAGGCC    144

BSNT_05453___    151 TATCACAGCTATGAGCACCGCAAGCTGATTCTTGAAACGATCCGCTACGT    200
                     ||.|||||||||||.|||.|.|||||||||||.|||||||||||.||.||
RBAM_032870__    145 TACCACAGCTATGAACACAGAAAGCTGATTCTGGAAACGATCCGTTATGT    194

BSNT_05453___    201 AGACGAAGTCATCCCGGAAAAAAACTGGGATCAAAAGGTACAAGATGT--    248
                     .|||||||||||.||||||||.|.||||||||||||.||||..||.||  
RBAM_032870__    195 CGACGAAGTCATTCCGGAAAACAGCTGGGATCAAAAAGTACGTGACGTAG    244

BSNT_05453___    249 --GATCAATCATGATATCGATGTATTTGTCATGGGGGATGACTGGGAAGG    296
                       |||||  ||  |.|||||.||.||.||.|||||.||.||.||||||||
RBAM_032870__    245 CGGATCA--CA--ACATCGACGTGTTCGTAATGGGAGACGATTGGGAAGG    290

BSNT_05453___    297 GAAATTCGACTTCCTAAAGGACTACTGCAAGGTTGTTTACCTCCCGAGAA    346
                     .||||||||.|||||.||.||..|.|||.|.||..|.||||||||.||||
RBAM_032870__    291 CAAATTCGATTTCCTTAAAGATCAATGCGAAGTCATCTACCTCCCTAGAA    340

BSNT_05453___    347 CCGAAGGAATTTCCACGACAAAGATCAAAGAGGAAATCGCGAACC----T    392
                     |||||||.||||||||.|||.||||.|||.|.|||||.|    ||    |
RBAM_032870__    341 CCGAAGGCATTTCCACCACACAGATTAAAAAAGAAATTG----CCGGGGT    386

BSNT_05453___    393 TTAA    396
                     .|||
RBAM_032870__    387 GTAA    390


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