Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05452 and RBAM_032850
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:55
# Commandline: needle
# -asequence dna-align/BSNT_05452___tagF.1.9828.seq
# -bsequence dna-align/RBAM_032850___tagF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05452___tagF-RBAM_032850___tagF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05452___tagF-RBAM_032850___tagF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05452___tagF
# 2: RBAM_032850___tagF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2346
# Identity: 1476/2346 (62.9%)
# Similarity: 1476/2346 (62.9%)
# Gaps: 381/2346 (16.2%)
# Score: 4198.0
#
#
#=======================================
BSNT_05452___ 1 ATGGATAGTGCAATTCC-----GATAAAATTT----CAGCTGCTGGAAAT 41
||||.||..|.||.||| ||||.||.|| ||.|| .||.
RBAM_032850__ 1 ATGGGTATAGAAAATCCTGTCAGATACAAGTTAAAACATCT-----TAAC 45
BSNT_05452___ 42 AAAAATTAATGATACTGGCCTCTATTTTGTGTT-CGAAAGTTCTGTCTCT 90
|.|||..|| ||.|| |||..|..|| |||.| |.|||
RBAM_032850__ 46 ATAAAGGAA-GAGAC--------ATTCAGCATTACGATA-TCCTG----- 80
BSNT_05452___ 91 CTTGATCATGTCGATG----------------TTTTGGCAG----TTAAC 120
|||..|||||..|| |.|| ||| |.||.
RBAM_032850__ 81 --TGAAAATGTCACTGCAGGGGAAGAGCCTTCTCTT--CAGATTATAAAT 126
BSNT_05452___ 121 CGCAATACGAAAAAAG----ACATGCGTGTACC-ATGTAAC--------- 156
|| ||.||.||||| ||.|.| .||.|| .||.|||
RBAM_032850__ 127 CG---TAAGACAAAAGCGGAACTTTC-CGTCCCTCTGAAACGGTTGGCCG 172
BSNT_05452___ 157 -AAAATAAGCG----ATTCAAAGCAGTTAAAAGCAGCGAAAGTATCTTTA 201
|.| |.||| .|.|.|.||.||||..|||| ||
RBAM_032850__ 173 GAGA--AGGCGGGGAGTACCATGCTGTTATGAGCA-CG------------ 207
BSNT_05452___ 202 GATGACCTATCTAACCTGATGATA--GACG---AAGCG--GTCATTGATT 244
|||...||.|||.||| ||| |||| ||| | ||| |.||||
RBAM_032850__ 208 GATCTGCTTTCTGACC-----ATACGGACGGCAAAG-GATGTC-TGGATT 250
BSNT_05452___ 245 TTTATG--TACTATATAAAAATAATAAAA--AATATCAATGTAAAAAGAG 290
|.|||| |.||.||| .|||.||.|.| .|||||| |||||||..|
RBAM_032850__ 251 TCTATGTCTCCTTTAT--CAATGATGACAGTGATATCA--GTAAAAAACG 296
BSNT_05452___ 291 GATTTACA---CAGCATCAAAACCGATTGAGCTGTCTTGGCATAAGGATC 337
| |||.| ||||.| ..||||.|||||.|||||||...||||.|||.
RBAM_032850__ 297 G--TTAAAATCCAGCCT-TGAACCTATTGAACTGTCTTCTTATAAAGATG 343
BSNT_05452___ 338 AAGCCAATCA---GTTCATTTATTTACCGTATAAGACCCTAAAAGGCCAC 384
|.||..|||| |||| |.|||.||.||.|.|||....|||||..|.
RBAM_032850__ 344 AGGCTCATCATATGTTC---TTTTTCCCTTACACGACGAAGAAAGGGAAT 390
BSNT_05452___ 385 TTCGCTCTTGATGTTTTACGAAGTAAAGCAGTGGCTGAA----------- 423
|| |||.| ||||||.|..||.|||
RBAM_032850__ 391 TT--CTCCT--------------TAAAGCTGCTGCAGAAAAAGTTCGTCA 424
BSNT_05452___ 424 -CCGGACAGCATGAAGTTATGC-----TCCGACGGAAAATTAATGATCGG 467
.||||..| |||||.|...|| ||.|||||.|..||| .|||.|
RBAM_032850__ 425 CGCGGATTG-ATGAAATGGAGCTCGAATCTGACGGCAGCTTA--CATCTG 471
BSNT_05452___ 468 --AGGCTATACTTTTCTGCTAGATGCTGAAG-AACGTTCATTAG-TAAAA 513
|||.|.|.|.||.|.|||..||||.|.|| |||.||.| || |||||
RBAM_032850__ 472 AAAGGTTTTGCATTCCGGCTGAATGCGGCAGAAACCTTAA--AGATAAAA 519
BSNT_05452___ 514 AGCAGAAAGCTGGTTTT--AAAGGAAATTAGCCAAAACGATAAGGAGAGG 561
...|.|||.|||.||.| |||.||| ||||.||.|||.|||||
RBAM_032850__ 520 GAAAAAAACCTGATTCTGAAAATGAA-------AAAAGGAAAAGAAGAGG 562
BSNT_05452___ 562 -------TTTTTTGA--TTTCC-CTTTAAAAGACGTTCAGCGCGGCGATC 601
..||.||| |.||| ||| .|.|||||.|.|.|...|||.|
RBAM_032850__ 563 AGCCTCTCATTCTGAAGTATCCGCTT--CACGACGTGCCGAGACACGACC 610
BSNT_05452___ 602 TATCAGCTGAT-----TCTTCAGATCATACCG-------------TAGGG 633
| |||| |.|||||..||.|.|| ||||.
RBAM_032850__ 611 T------TGATGAATATGTTCAGGACACAACGATGCTTGACACGATAGGC 654
BSNT_05452___ 634 TTTGAGGTGGAAATTGATCTGAAAAAGC--TATATGAAGA----AAACAG 677
|||||.....||||||||.|| ||.|| |.|||.|||| ||.|||
RBAM_032850__ 655 TTTGATACAAAAATTGATTTG--AATGCCGTTTATAAAGAATTGAATCAG 702
BSNT_05452___ 678 GATGCCTGCT-TTCTTTCAGTTTTATATAGAATACGTAGGTGAAGATGCT 726
|.||| ..||||||.||..||||..|||.|.|...|||||||||.
RBAM_032850__ 703 -----CAGCTAACCTTTCAATTCCATATTCAATTCATTTTTGAAGATGCC 747
BSNT_05452___ 727 GCAACAGGGGAGGAAATCATTATAAAAAGCAGGACATTCAGG---CTGAT 773
|..||.||.||.||.||.||.|..||.||||...|.||.|.| ||||
RBAM_032850__ 748 GGGACGGGTGAAGAGATTATCACCAACAGCAAACCGTTAAAGGTTCTGA- 796
BSNT_05452___ 774 TGATGATATAGAC-AGT------TTTTCAATTGTTGACAC-------AAA 809
.||.|..|| ||| |...||||| ||| |||
RBAM_032850__ 797 ----AATCTGAACAAGTAAACCCTAACCAATT-----CACGATCCTGAAA 837
BSNT_05452___ 810 A-----AAAGGACCGGCTCGTTTTCACATTTATC-CGCAGAAGCGAAAAC 853
| |||||.||.||..|.||||||.||| || ||.|.|| ||||||
RBAM_032850__ 838 ACGGAGAAAGGGCCTGCCAGATTTCACGTTT-TCACGAAAAA--GAAAAC 884
BSNT_05452___ 854 GGAGCATGT--GTCTAAGAATGAATGATTACACGATCAGAACCCGTGCGG 901
|.|..||.| ..||.||||||||.|||||||...||||.|||||.|.||
RBAM_032850__ 885 GAAAAATCTCCACCTGAGAATGAACGATTACAGCTTCAGCACCCGCGTGG 934
BSNT_05452___ 902 TTTATTTTGCCAAAGGAAAAGGTAAAA---GGCTGATGTCAGTCATCCGT 948
..|||||||..|.||| ||||.|.||| ||| |.| ||.|..||
RBAM_032850__ 935 AGTATTTTGTGAGAGG-AAAGCTGAAACGGGGC-GCT-----TCCTTTGT 977
BSNT_05452___ 949 A---AAG-GCAAGAATAAAGTAAAGAAAAAGATTTCGGGCATGGTGAAGA 994
| ||| |.||||||||..| |||||||.| |||.|.|||.|
RBAM_032850__ 978 ACGCAAGAGAAAGAATAAGCT---GAAAAAGTT------CATTGAGAAAA 1018
BSNT_05452___ 995 GGGCATACTATTTTACTTTTGAA------------CTGGCCGGCAAACTG 1032
|.|||| |....||||.|.|| .|.||.||.||||||
RBAM_032850__ 1019 --GAATAC-AAAACACTTATAAAGCGGGATTCAGGGTTGCGGGGAAACTG 1065
BSNT_05452___ 1033 CCTGTTAAAAAGAAAACCGTCATTTTTGAAAGCTTTGCCGGTAAGCAGTA 1082
|||||.|||.|||||...|||||.|||||||||||||||||.||.|||||
RBAM_032850__ 1066 CCTGTCAAACAGAAATTTGTCATGTTTGAAAGCTTTGCCGGAAAACAGTA 1115
BSNT_05452___ 1083 CAGCTGCAATCCAAGAGCAATTTATGAATATATG----AAGGAACATCAC 1128
||||||||||||..|.||.|||||||||||.||| ||| |.|| .
RBAM_032850__ 1116 CAGCTGCAATCCGCGGGCGATTTATGAATACATGAGCAAAG--AGAT--G 1161
BSNT_05452___ 1129 CCGGAATACAACTTAATATGGAGTGTAAATCCGAGTTA--TACAGAAATT 1176
|||||||||....|....|||||||||||.||...||| .|||||.|||
RBAM_032850__ 1162 CCGGAATACCGTCTCTGCTGGAGTGTAAACCCCGCTTACTCACAGACATT 1211
BSNT_05452___ 1177 TTCGAAGAAAAA--AATGTCCCTTATATTAACCGATTCACGCTGAAGTGG 1224
| .||||.||| || |.||||||||..|.||.||.|.|.|.||.|||
RBAM_032850__ 1212 T--AAAGATAAAGGAA--TTCCTTATATCGAACGCTTTAAGTTCAAATGG 1257
BSNT_05452___ 1225 CTGTTCGCCATGGCAAGGGCGGAATTTTGGGTTGTAAACAGCCGGCTCCC 1274
|||||.|||||||||||.||.||.|..||||||||.||||||||..|.||
RBAM_032850__ 1258 CTGTTTGCCATGGCAAGAGCCGAGTACTGGGTTGTCAACAGCCGTATGCC 1307
BSNT_05452___ 1275 TTTATGGATACCCAAACCAAAGCACACGACATATGTGCAGACGTGGCACG 1324
..|.|||||.||.|||||..||||.|||||||||||.|||||.|||||.|
RBAM_032850__ 1308 GCTGTGGATTCCGAAACCTGAGCATACGACATATGTCCAGACATGGCATG 1357
BSNT_05452___ 1325 GGACTCCGCTGAAAAGGCTTGCCGTCGATATGGAAGAAGTGCACATGCCG 1374
|.||.||..|.||..|.||||||||.||||||||.||||||||.|||||.
RBAM_032850__ 1358 GCACGCCTTTAAAGCGCCTTGCCGTAGATATGGATGAAGTGCATATGCCC 1407
BSNT_05452___ 1375 GGCACCAACACTGAGAAGTACAAGCAAAATTTCACTAAAGAAGCATCTAA 1424
||.||.||||||||.||.|||||||..||.||.||.|.|||.||.||.||
RBAM_032850__ 1408 GGAACAAACACTGAAAAATACAAGCGCAACTTTACGACAGAGGCTTCAAA 1457
BSNT_05452___ 1425 GTGGGACTATTTAATATCCCCGAATCG-GTATTCAACCGAGATTTTTGCC 1473
||||||.||..|.||.||.||||| || .|||||||||||.||.||.|||
RBAM_032850__ 1458 GTGGGATTACCTGATTTCACCGAA-CGCATATTCAACCGAAATATTCGCC 1506
BSNT_05452___ 1474 CGCGCTTTTCAATTTAACAAAACAATGATTGAGTCCGGATACCCGAGGAA 1523
||.||.|||||.|||||.|||||.||||||||.||.|||||.|||.||||
RBAM_032850__ 1507 CGGGCGTTTCAGTTTAATAAAACCATGATTGAATCGGGATATCCGCGGAA 1556
BSNT_05452___ 1524 TGATTTTCTGTATACAGACAACCGCC---CGG------AAACGATGAAGG 1564
|||.||.||..|.||.||.|||.||| |.| ||.||.||||.|
RBAM_032850__ 1557 TGACTTCCTTCAAACGGATAACAGCCTTTCTGTCATTAAAGCGCTGAAAG 1606
BSNT_05452___ 1565 CCATAAAGAAAAAAATGAATATCCCCGAAGATAAAAAGGTCATTTTATAT 1614
|||||||||||.|.||..||||||||||.||.|||.|.||.
RBAM_032850__ 1607 ---------AAAAAATGAATCTTCCGCAAGATAAAAAAGTGATTATCTAC 1647
BSNT_05452___ 1615 GCACCGACATGGCGGGACGATCAGTTCTATAAAAAAGGAAAATACAAATT 1664
|||||||||||||||||.||.||.||.|||||.||.|||||||||||.||
RBAM_032850__ 1648 GCACCGACATGGCGGGATGACCAATTTTATAAGAAGGGAAAATACAAGTT 1697
BSNT_05452___ 1665 TGACCTTGATTT-GA-----AT--ATGGAAAAGCTGCGAGAGGAGATCGG 1706
|||||||||||| || || || ||.||||.|.||||||
RBAM_032850__ 1698 TGACCTTGATTTAGACCTTCATCAAT--------TGAGAGAAGCGATCGG 1739
BSNT_05452___ 1707 CGATAATTACGTCATCATTTTAAGAATGCACTATTTAGTCGCGGAAAACT 1756
||||..|||.|||||.||||||.|||||||.|||.|.||.||||||||||
RBAM_032850__ 1740 CGATCGTTATGTCATTATTTTACGAATGCATTATCTCGTGGCGGAAAACT 1789
BSNT_05452___ 1757 TTGACCTTTCACCCTACAAAGGATTCGCATATGATTTCT-CAGCATATGA 1805
||||.||...|||.||..|||||||.||.|||||||||| |||| ||.||
RBAM_032850__ 1790 TTGATCTCGGACCGTATGAAGGATTTGCTTATGATTTCTCCAGC-TACGA 1838
BSNT_05452___ 1806 AGATATTCGCGAACTTTATATGGTATCTGATTTGTTAATTACAGATTACT 1855
||||||.||.||.||.||||||||.||||||||..|.||.||.||.||.|
RBAM_032850__ 1839 AGATATCCGTGAGCTGTATATGGTCTCTGATTTACTCATAACGGACTATT 1888
BSNT_05452___ 1856 CTTCAGTATTCTTTGATTTCGCAAATTTGAAACGTCCAATGATTTTCTTC 1905
|.||.||.||.|||||.|..||||||.|||||.|.||.|||.|.||.|..
RBAM_032850__ 1889 CCTCTGTCTTTTTTGACTATGCAAATCTGAAAAGACCGATGCTGTTTTAT 1938
BSNT_05452___ 1906 GTTCCAGACATTGAAACCTATCGTGACAAGCTGCGCGGCTTTTATTTTGA 1955
||.||.||.||.|||||.||.||.||.||.||..|.||.|||||.|||||
RBAM_032850__ 1939 GTGCCTGATATCGAAACGTACCGGGATAAACTCAGAGGGTTTTACTTTGA 1988
BSNT_05452___ 1956 CTTTGAACGAGAAGCACCAGGTCCGTTAGTCAAAACGACTGAGG-GA-GT 2003
|||||||..||||||.||.||.|||.|.|||||| ||...||| || ||
RBAM_032850__ 1989 CTTTGAAAAAGAAGCGCCCGGCCCGCTTGTCAAA--GAAACAGGTGACGT 2036
BSNT_05452___ 2004 AATTGAGAAAA----TCAAGGAAACAGAGACATCTGACTATCGCCTGCCA 2049
.|| .||| ||||.|||||.||..||..|||.|||...||.||.
RBAM_032850__ 2037 TAT----CAAATGGGTCAATGAAACGGAATCAGATGATTATAAGCTTCCG 2082
BSNT_05452___ 2050 GACATT--TTTGAACCTTTTTATGAAAGGTTTTGTTACCTGGAGACAGGT 2097
| ||| ||.|..||||||||.||.|.|||.|||||..|.||.||.||.
RBAM_032850__ 2083 G--ATTCATTCGGGCCTTTTTACGAGAAGTTCTGTTATTTAGAAACCGGA 2130
BSNT_05452___ 2098 AACTCTTCGGAAAAAGTAGTGAATAG-AATTTTTG------AGTAA 2136
.|.||.||.|||||||..|| ||.|| .|||||.| |||||
RBAM_032850__ 2131 GAATCGTCTGAAAAAGCCGT-AAAAGTGATTTTCGGGGACAAGTAA 2175
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