Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05449 and RBAM_032840

See Amino acid alignment / Visit BSNT_05449 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:55
# Commandline: needle
#    -asequence dna-align/BSNT_05449___tagG.1.9828.seq
#    -bsequence dna-align/RBAM_032840___tagG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05449___tagG-RBAM_032840___tagG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05449___tagG-RBAM_032840___tagG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05449___tagG
# 2: RBAM_032840___tagG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 861
# Identity:     616/861 (71.5%)
# Similarity:   616/861 (71.5%)
# Gaps:          66/861 ( 7.7%)
# Score: 2093.5
# 
#
#=======================================

BSNT_05449___      1 ATGAATGCATTAGTGAGAATACTGAAAGAGCAA-GCAACGTCATTTTC-T     48
                     |||||||||||.||.|.|||.|||||||||||| .|||| ||||||.| .
RBAM_032840__      1 ATGAATGCATTGGTAAAAATTCTGAAAGAGCAATTCAAC-TCATTTCCGC     49

BSNT_05449___     49 TTAATATTACGCTTGGCAGCTTACGAAACAAAATCAAAATACCAAATGAA     98
                     |.|.|||...|||| ||||..||||||||.||||||||.||.|||.||||
RBAM_032840__     50 TGATTATGCGGCTT-GCAGTGTACGAAACGAAATCAAAGTATCAAGTGAA     98

BSNT_05449___     99 CTATTTGGGTGTGCTGTGGCAGTTGTTAAATCCACTCATTCAAATGTTGG    148
                     ||||||||||.|..||||||||||..|.||.||..|.|||||||||.|||
RBAM_032840__     99 CTATTTGGGTATATTGTGGCAGTTTCTCAACCCTATGATTCAAATGCTGG    148

BSNT_05449___    149 CCTACTGGTTTGTTTTTGGGATCGGGATT------AGAAAAAGCACTGAT    192
                     |.||||||||.||.|||||..||||||||      .||.|      ||||
RBAM_032840__    149 CTTACTGGTTCGTATTTGGTCTCGGGATTCGCGGCGGACA------TGAT    192

BSNT_05449___    193 GTGGTTACGGGTATTGGTGA-AGTGT--CTTTTATCATTTGGATGCTAGC    239
                     .||||....||.|.|||.|| ||.||  |.||.|||.|.||||||||.||
RBAM_032840__    193 ATGGTGCTTGGAAATGGAGACAGCGTACCGTTCATCGTCTGGATGCTGGC    242

BSNT_05449___    240 CGGTTTGATTCCGTGGTTTTTTATCAGCCCGACGATTCTAGATGGTTCAA    289
                     |||.||.|||||.|||||.||||||||.||||||||.||.||||..||.|
RBAM_032840__    243 CGGCTTAATTCCTTGGTTCTTTATCAGTCCGACGATACTGGATGCATCTA    292

BSNT_05449___    290 ACAGTGTATATAAGCGAATCAACATGGTGGCCAAAATGAATTTTCCAATT    339
                     ||||.||.|.|||.||.||.||..|.|||.|.||||||||.|||||.||.
RBAM_032840__    293 ACAGCGTTTTTAAACGGATAAATTTAGTGTCGAAAATGAACTTTCCGATC    342

BSNT_05449___    340 AGCTCGCTTCCTTCAGTAGCGATTGTGGCAAACCTGTTCAGCTATTTTGT    389
                     ||.||.||.|||||.||||.|||.|...|.||..|.|||||.||.|||||
RBAM_032840__    343 AGTTCACTGCCTTCTGTAGTGATAGCATCGAATTTATTCAGTTACTTTGT    392

BSNT_05449___    390 GATGATGGTGATTTATAT-----CGTTGCATTAACAGC-GTCTGGTATTT    433
                     ||||||||.|||||||||     .|.||| |.|.||.| |.|||     |
RBAM_032840__    393 GATGATGGCGATTTATATTATTGTGCTGC-TGAGCAACGGACTG-----T    436

BSNT_05449___    434 ATCCAAGTCTTCATTGGATTGAATACATTTACTATTTTATCTGTATGGTT    483
                     .|||.|..|||||.|||.|..||||.|||||.||.||..|.||.|||.|.
RBAM_032840__    437 TTCCGACGCTTCACTGGCTGCAATATATTTATTACTTGTTTTGCATGATC    486

BSNT_05449___    484 ATATTTATGTTTGCCTTTAGTTTGTTTAATTCAACCATTAGTGTGCTTGT    533
                     |..|||||||||||.||..|..||||||||||||||||.||.||..|..|
RBAM_032840__    487 AGTTTTATGTTTGCTTTCGGCCTGTTTAATTCAACCATCAGCGTTTTAAT    536

BSNT_05449___    534 TAGGGACTATCAGTTTTTGCTCCAATCTGTGACAAGGCTGCTGTTTTTTT    583
                     .||||||||||||||||||||.|||.|.||.|||||||||||.||||||.
RBAM_032840__    537 CAGGGACTATCAGTTTTTGCTTCAAGCCGTCACAAGGCTGCTCTTTTTTC    586

BSNT_05449___    584 TGTTGCCTATCTTTTGGGATAT--AGGACATCAGTTAGGGAA-AGAGCAT    630
                     |..||||.||.||.|||||.||  .|||.|  |.||.||.|| |||    
RBAM_032840__    587 TTCTGCCGATTTTCTGGGACATTGCGGAAA--AATTCGGAAACAGA----    630

BSNT_05449___    631 CCC----GTTTT-ACTAACAGCT----ATTAAACTGAATCCACTTTTTTA    671
                      ||    ||||| ||   ||.||    .||||||     ||.|||||.||
RBAM_032840__    631 -CCTGAAGTTTTGAC---CATCTTGAAGTTAAAC-----CCTCTTTTCTA    671

BSNT_05449___    672 TATTTTAGATGGATTTAGAAGCAGCTTTTTCGACGGAAGC--TGGTTCTT    719
                     ||||.|.||.||.||||||..|||||||.|.||.||  ||  |||||.||
RBAM_032840__    672 TATTATCGAGGGCTTTAGAGACAGCTTTATGGAAGG--GCAGTGGTTTTT    719

BSNT_05449___    720 CGAAGATATAACATACACGTTGTATTTCTGGGCTT--TCACATTATTGCT    767
                     |.|.|||.|.|.|||||||.|||||||||||  ||  |||||.|..||.|
RBAM_032840__    720 CCACGATGTGAAATACACGCTGTATTTCTGG--TTCGTCACACTGCTGTT    767

BSNT_05449___    768 CTTGACTGTAGGATCTGTCCTGCATATGAAATTCAGGGATAGGTTTGTTG    817
                     .||.||.||.||.||..|.||.||||||||||||||.||||.||||||||
RBAM_032840__    768 ATTAACAGTCGGTTCACTTCTTCATATGAAATTCAGAGATAAGTTTGTTG    817

BSNT_05449___    818 ACTTTCTTTAA    828
                     |||||||||||
RBAM_032840__    818 ACTTTCTTTAA    828


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05449 and RBAM_032840

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
