Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05429 and RBAM_032790
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:54
# Commandline: needle
# -asequence dna-align/BSNT_05429.1.9828.seq
# -bsequence dna-align/RBAM_032790___lytA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05429-RBAM_032790___lytA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05429-RBAM_032790___lytA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05429
# 2: RBAM_032790___lytA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 424
# Identity: 198/424 (46.7%)
# Similarity: 198/424 (46.7%)
# Gaps: 173/424 (40.8%)
# Score: 453.0
#
#
#=======================================
BSNT_05429 1 TTGGAATTTGTCGATAAAAAGGGAGAGGTGAAGAAGATG-AAAAAACT-- 47
||| ||||||||
RBAM_032790__ 1 ------------------------------------ATGAAAAAAACTAT 14
BSNT_05429 48 -----CATAGTTCTGACATTATCAATGCTGCTTT----TGTTGT-----C 83
|.|.|||| |.|||.||||||| |||||| |
RBAM_032790__ 15 TGCAGCTTCGTTC--------TTAATACTGCTTTTTTCTGTTGTATTGGC 56
BSNT_05429 84 AGCTTGCGGCACTTCGGGCCAATCGGAGGACAAGTTAAGCTCAGGCAATA 133
|||.|||||.||..|||..|||||..|| |||..||||
RBAM_032790__ 57 AGCGTGCGGAACGGCGGATCAATCAAAG---AAGGGAAGC---------- 93
BSNT_05429 134 AAAATGCAGCATCT--GAAGAAACCA---TCACTAAAGAA--GGTTCAT- 175
|..||| |.|| ||||| ||| .|||||| || |||
RBAM_032790__ 94 --------GGTTCTTCGGAG-AACCAGGCTCA-AAAAGAAACGG--CATA 131
BSNT_05429 176 -----TCGCGGGGT-TGGCTGACAGCCATACAATTGCGGTGAACATCGAT 219
|| ||| ||||.||.|..||.|||||||..||.||..|.|||
RBAM_032790__ 132 TTATGTC----GGTATGGCGGATACGCACACAATTGAAGTAAAAGTGGAT 177
BSNT_05429 220 GGCAAAGAAACAAC------GCTTCAAAT----TGATGA------AGATC 253
| |.||.| ||||..||| |||||| .|||.
RBAM_032790__ 178 G-------ATCAGCCCGTCAGCTTTGAATTTTCTGATGACTTCTCTGATG 220
BSNT_05429 254 TTCAGGAAAAAGTCAATTCCATTGAAGAGGGCAAAAAAGTCGAAGTC--C 301
|||.|.|.|||.||| ||.||||.|.|.||||| |
RBAM_032790__ 221 TTCTGAATAAATTCA---------------GCGAAAATGACAAAGTCAGC 255
BSNT_05429 302 AATA-----TACAAAAGTCGAGAATGGCGTCTTGGAGCTGAAAAG----C 342
|.|| |.||.||.| ||.||.| ||..||||| |
RBAM_032790__ 256 ATTACGTATTTCACAAAT-GATAAAG----------GCCAAAAAGAGATC 294
BSNT_05429 343 ATCGAAATC---------AAATAA 357
|..|||||| ||||||
RBAM_032790__ 295 AAGGAAATCGAGAAAGCAAAATAA 318
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