Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05418 and RBAM_032730
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:53
# Commandline: needle
# -asequence dna-align/BSNT_05418___tuaD.1.9828.seq
# -bsequence dna-align/RBAM_032730___tuaD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05418___tuaD-RBAM_032730___tuaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05418___tuaD-RBAM_032730___tuaD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05418___tuaD
# 2: RBAM_032730___tuaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1457
# Identity: 926/1457 (63.6%)
# Similarity: 926/1457 (63.6%)
# Gaps: 238/1457 (16.3%)
# Score: 2921.5
#
#
#=======================================
BSNT_05418___ 1 ATGTTGAAAAGAATTGCTGTCATT-GGGACGGGATATGTCGGGCTGGTGT 49
.||||||.|||.||||| ||| ||.||.||.|||||.||.||.||.|
RBAM_032730__ 1 ---GTGAAAAAAATCGCTGT-ATTAGGAACAGGGTATGTAGGTCTTGTAT 46
BSNT_05418___ 50 CTGGAACTTGTTTTGCTGAAGTGGGAAACTCAGTTGTC-TGCTGTGATAT 98
||||||||||||||||.|||.|.||..| |||..||.| ||||||||.||
RBAM_032730__ 47 CTGGAACTTGTTTTGCGGAAATCGGCCA-TCATGTGACTTGCTGTGACAT 95
BSNT_05418___ 99 CGACGCTGAA---AAAATAAGAGGACTCTTAGC----CGGAGTAATGCCG 141
|.| |||| |||||.|||.| ||| || ||||||.||.|||
RBAM_032730__ 96 CAA---TGAAGCGAAAATCAGAAG---CTT-GCAAAACGGAGTCATCCCG 138
BSNT_05418___ 142 ATTTATGAGAACGGCCTAAAAGAGCTTGTGGATAAAAACGTAAACGAAAA 191
||.||||| |.||| || ||||.|||...|..||.|| ||||
RBAM_032730__ 139 ATATATGA-ACCGG-------GA-CTTGAGGAATTAGCCGAAA---AAAA 176
BSNT_05418___ 192 T------------CGCTTATTTTTCTCTACTGATATTCCAAAAGCGATTG 229
| |||||| |.||.|||.| || |..||||
RBAM_032730__ 177 TGTCAGTGCCGGGCGCTTA---TCCTTTACGG-----CC----GGCATTG 214
BSNT_05418___ 230 ------------AAGAAGCTGAGATTATTTATATTGCAGTCGGAACACCG 267
|||..|||||.||.||.|||||.||.|||||.||.|||
RBAM_032730__ 215 AGCCGGCTGTGAAAGCCGCTGATATCATCTATATCGCCGTCGGTACGCCG 264
BSNT_05418___ 268 ATGTCGGAAACAGGGGAAGCAGATCTGACATTTGTTAAATCTGTTGCCGA 317
|||||..|.||.||.|||||.||||||||.|...||||..|.|..||..|
RBAM_032730__ 265 ATGTCAAAGACGGGTGAAGCCGATCTGACCTACATTAAGGCAGCGGCGCA 314
BSNT_05418___ 318 AATGATCGGAAAGCATCTGAACGGCTATAAAGTCATCGTCAACAAAAGCA 367
||..||||||.|.||.||||||||.||.|||.||||.||||.||||||||
RBAM_032730__ 315 AACAATCGGAGAACAGCTGAACGGATACAAAATCATTGTCACCAAAAGCA 364
BSNT_05418___ 368 CTGTCCCTGTTGGCACTGGAAAGCTCAT---ACAAGGTATCATACAACGT 414
||||.||.||.||.||.|||||||||.| .||| |||.| ||.||.
RBAM_032730__ 365 CTGTTCCGGTCGGGACGGGAAAGCTCGTTTACCAA---ATCGT-CAGCGA 410
BSNT_05418___ 415 A-TTTCAAAAGGAGAAGTTCCTTTCGACGTCGTTTCGAATCCCGAATTCC 463
| ..|||||.|||.||..|||.||.||.||||..||.|||||.|||||||
RBAM_032730__ 411 AGCGTCAAAGGGAAAATATCCGTTTGATGTCGCGTCAAATCCTGAATTCC 460
BSNT_05418___ 464 TTCGTGAAGGAACAGCTATTTACGATACGATGAATATGGAAAGAGCCGTC 513
|.||.|||||..|.||..|....|||||||||.|.|||||..|.||.|||
RBAM_032730__ 461 TCCGCGAAGGTTCGGCGGTGCGGGATACGATGCAGATGGAGCGGGCGGTC 510
BSNT_05418___ 514 ATCGGCGCGACAAGCGAAAGGGCTGCTGCGATAATTGAAGAACTTCATAA 563
||||||||.|||||||||...||.|||.||.|.||||||||.||||||||
RBAM_032730__ 511 ATCGGCGCCACAAGCGAACATGCCGCTTCGGTCATTGAAGAGCTTCATAA 560
BSNT_05418___ 564 GCCTTTTCAAACGAAAATTGTCAAGTCTAACCTTGAAAGTGCAGAAATGA 613
|||.||.|..|||||.||.||.|||.|.||.||||||||.||.|||||||
RBAM_032730__ 561 GCCGTTCCGTACGAAGATCGTAAAGACCAATCTTGAAAGCGCGGAAATGA 610
BSNT_05418___ 614 TTAAATATGCTGCAAATGCATTTTTGGCTACAAAGATCTCGTTCATTAAT 663
||||.|||||.||||||||.|||||.||..|.||.||.||.||.|||||.
RBAM_032730__ 611 TTAAGTATGCCGCAAATGCTTTTTTAGCCGCCAAAATATCTTTTATTAAC 660
BSNT_05418___ 664 GATATCGCGAATATTTGCGAAAGAGTCGGAGCTGACGTATCAAAGGTGTC 713
||||||||.||||||||||||.|.|||||.||.|||.|.||..|.|||||
RBAM_032730__ 661 GATATCGCCAATATTTGCGAACGTGTCGGGGCGGACATTTCCCACGTGTC 710
BSNT_05418___ 714 TGAAGGTGTCGGACTCGACAGCAGAATCGGCAATAAATTTTTAAAAGCCG 763
.|||||.|||||.||.||||||.|.|||||.|||||||||.|..|.||.|
RBAM_032730__ 711 AGAAGGCGTCGGTCTTGACAGCCGGATCGGGAATAAATTTCTCCAGGCGG 760
BSNT_05418___ 764 GAATCGGCTTTGGTGGCTCCTGCTTCCCTAAAGATACAATGGCTTTATTG 813
|.|||||.||.||.||.||||||||.||.||.|||||||.||||||||||
RBAM_032730__ 761 GCATCGGATTCGGCGGATCCTGCTTTCCGAAGGATACAACGGCTTTATTG 810
BSNT_05418___ 814 CATATCGCGAAGTCAGCCGGCTACCCTTTTAAAATGATTGAAGCCGTCAT 863
||||||||.||..|.||||||||.||.|||.|||||||.|||||||||||
RBAM_032730__ 811 CATATCGCAAACGCCGCCGGCTATCCGTTTCAAATGATGGAAGCCGTCAT 860
BSNT_05418___ 864 CGAGACGAACCAAAAGCAGCGTGCCCACATTGTGCAGAAGCTCCTTGATG 913
.||.||.||.||.||||||||.|.||..|||..|.|.|| ||
RBAM_032730__ 861 TGAAACCAATCAGAAGCAGCGGGTCCGTATTACGGAAAA--------AT- 901
BSNT_05418___ 914 TGTTCGGCG--AT-------TTAAACGGCAAGACCATTTCAATTCTTGGT 954
||..|.||| || |||||.||.||.|||.|..|..|.||.||.
RBAM_032730__ 902 TGAACCGCGCCATCGGTCCCTTAAAAGGGAAAACCGTGGCCGTACTGGGG 951
BSNT_05418___ 955 TTGGCATTCAAGCCTAATACAAACGATATGCGCTCAGCTCCATCTCTGGA 1004
.||||.||.||.||..|.|||||.||..|.|||||.||.||..||||.||
RBAM_032730__ 952 CTGGCCTTTAAACCGCACACAAATGACGTCCGCTCCGCCCCGGCTCTTGA 1001
BSNT_05418___ 1005 TGTCATTCCGACGCTGAGAAGTCTT---------GGTGCTAAAGTCAAAG 1045
|.|||| ||| |||.||| ||.|||.|.||.||||
RBAM_032730__ 1002 TATCAT-----CGC----AAGCCTTAAAGAGCAGGGCGCTCACGTGAAAG 1042
BSNT_05418___ 1046 CGTTTGATCCGATTGCGGTTCCTGAAGCAGAAAAGATTCTGGGCGATCAA 1095
|||.|||||||||.|||.||||.|||||
RBAM_032730__ 1043 CGTATGATCCGATCGCGATTCCCGAAGC---------------------- 1070
BSNT_05418___ 1096 GCTGTTTACAGCGAAGATCTGTATGAGACG-----ATTCAAGAT------ 1134
|| |||| |||.| ||.|||||| |||.||.||
RBAM_032730__ 1071 ---GT---CAGC---GATAT-TAGGAGACGGCGGCATTGAATATCACACA 1110
BSNT_05418___ 1135 ----------------------------ACGGATGCCTGCGTCATATT-- 1154
|||.||||||| |||
RBAM_032730__ 1111 GAACTGTACAGTGCCATCAAAAACGCGGACGCATGCCTG------ATTAC 1154
BSNT_05418___ 1155 GACAGAGTGGCATGAGATACAGAACATGGATATTACCAAACTCAAG--GC 1202
.|||||.||||..||..|..||.|.||||||.||...|.|.|.||| ||
RBAM_032730__ 1155 AACAGATTGGCCGGAAGTCAAGGAGATGGATCTTCAGAGAGTGAAGCAGC 1204
BSNT_05418___ 1203 CGCTTTGAAAAATCCCGTCTTAATCGATGGACGTAATATATTTGAAGTTG 1252
.|| |.|||.|.||.|||.|.||.||.||..|.|||||.|||....|.|
RBAM_032730__ 1205 TGC--TCAAACAGCCGGTCATCATTGACGGCAGAAATATGTTTCCGCTGG 1252
BSNT_05418___ 1253 AAAAAATGAGAAACGAAGGT---ATGAT----CTATCATTCAATCGGACG 1295
||.|.||||| ||| |.||| .||||||||..|||||||
RBAM_032730__ 1253 AATATATGAG-------GGTTTCAGGATTCACTTATCATTCCGTCGGACG 1295
BSNT_05418___ 1296 GCCGGAAGTACAGGTAGAAGGAATTCTGACCAACGTATAA---------- 1335
.||||..||.||.|..|| ||.| ||| ||||
RBAM_032730__ 1296 TCCGGCGGTTCATGCCGA------TCGG--CAA---ATAAAAGAACTGGC 1334
BSNT_05418___ 1335 ------- 1335
RBAM_032730__ 1335 AAGATAG 1341
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