Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05413 and RBAM_032710
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:53
# Commandline: needle
# -asequence dna-align/BSNT_05413___tuaF.1.9828.seq
# -bsequence dna-align/RBAM_032710___tuaF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05413___tuaF-RBAM_032710___tuaF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05413___tuaF-RBAM_032710___tuaF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05413___tuaF
# 2: RBAM_032710___tuaF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 780
# Identity: 427/780 (54.7%)
# Similarity: 427/780 (54.7%)
# Gaps: 204/780 (26.2%)
# Score: 990.5
#
#
#=======================================
BSNT_05413___ 1 ATGAA-------TT--------TAATCAAACGTATTGCTGGTAGAGTGAA 35
||||| || |||.|...|||| |.||
RBAM_032710__ 1 ATGAAGGATATGTTGACAAGAATAACCCGGCGTA------------TCAA 38
BSNT_05413___ 36 AAAGTTTAT--TGTGGCGATAATTGTGCTTCCTCTTATTCTTGGTCTTGT 83
||||..||| |.|| |||.||||.|||.|| |.|.||.||..
RBAM_032710__ 39 AAAGAATATCATTTG--GATCATTGCGCTGCC-------CGTTGTGTTAG 79
BSNT_05413___ 84 GGGCTATTTTATACCGAAG--GGGA---GTGTTGCTCCGTCTGA------ 122
|||| | |||| ||.||| |||||..|
RBAM_032710__ 80 GGGC--------------GGCGGGATATGTATTG--CCGTCAAAAATCAG 113
BSNT_05413___ 123 --------------TTACA--------CGGCTACTGTAACGATATCAACC 150
||||| || ||||..|..|.
RBAM_032710__ 114 CGGAACCAGCAGTTTTACATCAGAAGCCG----------CGATCGCCGCG 153
BSNT_05413___ 151 GGAAACTATGGAGAA---GCTAAGTACAACAATGCAAAACAAGTACCGCT 197
|||||.||| ||..| ||| .||.||||||.|||||.||.|.|||||
RBAM_032710__ 154 GGAAATTAT-GATCATCCGCT--TTATAACAATACAAAAGAAATCCCGCT 200
BSNT_05413___ 198 GCTGTTGAAAAACGGAGCTTTTTTAAAGGATATTTTCCCGG-------GG 240
.||.||||..|.||..||.|||||||||.|...|.|.||.| .|
RBAM_032710__ 201 CCTTTTGACCAGCGATGCCTTTTTAAAGCAGGCTCTGCCTGATAAAACAG 250
BSNT_05413___ 241 ATGTCGGAAGAGGATTTGGC-GCAGTTGAAAG---AC-GATCTGGTGATT 285
|.|..|.|||| || ||.||..|||| || || ||| |.
RBAM_032710__ 251 ACGAAGAAAGA-------GCGGCCGTGAAAAGTAAACTGA-CTG----TC 288
BSNT_05413___ 286 GAAATCAGAA-CGGATTCGCTTTTTAATT--------TAAGCTACACAG- 325
|||| ||.|| |.||||| ||| |.|||| ||||
RBAM_032710__ 289 GAAA-CACAATCAGATTC--------ATTGATCACGGTCAGCT--ACAGC 327
BSNT_05413___ 326 GGCCTG-ACAAACAGAAAAC---ATCGGATACTTTAGG-------AAAAA 364
||||.| ||||||||.|.|| ||||| |..||.|.| |||||
RBAM_032710__ 328 GGCCAGAACAAACAGGAGACTGAATCGG-TGTTTCAAGCCGTCATAAAAA 376
BSNT_05413___ 365 TCAAAGACGCCTATATGAAAGGCGATAAGGCGCTTTTTTCAAAAAGGGAA 414
|.|.|.||||....|||.|||..||.|||..||||.|||.|
RBAM_032710__ 377 ---------CTTTTCTGAAGAATGATCAGGACCTGTTTGAAAAACGGGCA 417
BSNT_05413___ 415 GAAGTCATTG-AAAATAATATTAAGGCGCTTGAAGGCGAAACAGTCAGCT 463
.|||| |.|| ...|.|.||||...|||||||||||.|||||.||||||.
RBAM_032710__ 418 AAAGT-AGTGCGGCAGAGTATTGCTGCGCTTGAAGGAGAAACCGTCAGCG 466
BSNT_05413___ 464 CTGATTCAAAAGTTGACAAACAGCGGTTTTTGTATGAACTTGA--AACAA 511
|.||..|.|||||.||.||..|.||.|||||.|||||| |||| ||.|.
RBAM_032710__ 467 CGGACGCCAAAGTGGATAAGGAACGATTTTTATATGAA-TTGAATAATAC 515
BSNT_05413___ 512 GCAAGCTTGATATGAAGGCTGCTG----AAGAAATT--GAGCCCTTGAAC 555
|| ||||..|..||||.||.||.| .|..|||| |||||..||||.
RBAM_032710__ 516 GC-AGCTGAACCTGAAAGCGGCCGGCATCATCAATTCAGAGCCGATGAAT 564
BSNT_05413___ 556 GTA----CTAGATAACCAGGTTGTCGGCATGTCGCCTAAAAAAAGAGCGG 601
|.| |..||.|| ||||||.||||.|||||.|.|||||
RBAM_032710__ 565 GAAACGGCGGGACAA----------GGCATGCCGCCGAAAAAGAAAGCGG 604
BSNT_05413___ 602 TATTGGGCGTATTGATTGG-TTTGGCGCTGTCATTTTTTATTATTGTTGT 650
|..||||.||.||.||.|| .|||..|.|| |||||.|..|.|||||..|
RBAM_032710__ 605 TTCTGGGTGTTTTAATCGGCATTGCAGTTG-CATTTATGTTCATTGTCAT 653
BSNT_05413___ 651 TCCGGAAGTTTTCAGAGAACGT-----TAA 675
|||.||..||||.||||| || |||
RBAM_032710__ 654 TCCTGAGTTTTTTAGAGA--GTCCTTGTAA 681
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