Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05407 and RBAM_032680
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:52
# Commandline: needle
# -asequence dna-align/BSNT_05407___tagO.1.9828.seq
# -bsequence dna-align/RBAM_032680___tagO.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05407___tagO-RBAM_032680___tagO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05407___tagO-RBAM_032680___tagO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05407___tagO
# 2: RBAM_032680___tagO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1080
# Identity: 865/1080 (80.1%)
# Similarity: 865/1080 (80.1%)
# Gaps: 6/1080 ( 0.6%)
# Score: 3438.5
#
#
#=======================================
BSNT_05407___ 1 ATGCTTGACGAACGCATGATTCGCATTGTTGTTGCGTTTATTGTCTCGCT 50
||||||||||||||||||.|||||||.||||||||||||.|||||||.||
RBAM_032680__ 1 ATGCTTGACGAACGCATGTTTCGCATAGTTGTTGCGTTTTTTGTCTCTCT 50
BSNT_05407___ 51 GCTGACAGTTTTAATCATAACCCCAATCGTAAAAAGGATTGCGATTAAAA 100
|||.||.|||||||||.||||.||.||||||||||..||||||||.||||
RBAM_032680__ 51 GCTAACGGTTTTAATCCTAACTCCTATCGTAAAAAAAATTGCGATCAAAA 100
BSNT_05407___ 101 TAGGTGCAGTTGACCAGCCCAGCAATCGAAAAGTACATGACAAAATCATG 150
|||||||||||||||||||||||||.||||||||||||||.|||||.|||
RBAM_032680__ 101 TAGGTGCAGTTGACCAGCCCAGCAACCGAAAAGTACATGATAAAATAATG 150
BSNT_05407___ 151 CCCCGCATGGGCGGGCTGGCCATATTTATCGGGGTGGTTGCAGGCGTGCT 200
|||||.||||||||.||||||||.||||||||.||.|..||.||.|||||
RBAM_032680__ 151 CCCCGTATGGGCGGCCTGGCCATCTTTATCGGCGTAGCGGCGGGTGTGCT 200
BSNT_05407___ 201 TGCATCCGGTATTTACACAGAAACAAGGATGACGGCAATTACAGTCGGAG 250
.||..||||.||.||.|..|||||||..|||||.||.||||||||.||.|
RBAM_032680__ 201 CGCGGCCGGCATATATAATGAAACAAAAATGACCGCCATTACAGTGGGTG 250
BSNT_05407___ 251 CATTCATCATTATTGTGTTAGGTATTCTTGACGATAAATATCAATTAAGT 300
|.||.||.|||.||.|.|||||.||.|||||.||||||||.||||||||.
RBAM_032680__ 251 CGTTTATTATTGTTATTTTAGGAATCCTTGATGATAAATACCAATTAAGC 300
BSNT_05407___ 301 GCAAAAGTTAAGTTTTTGATTCAATTAGGTGTAGCCATTATGGTTGTAAG 350
|||||.||.||||||||..|.||..|.|..||.|||||||||.||||.||
RBAM_032680__ 301 GCAAAGGTAAAGTTTTTCGTCCAGCTGGCCGTGGCCATTATGATTGTGAG 350
BSNT_05407___ 351 CACTGGCTTAAAAATGGACTTTTTCTCAGTACCTTTTTTAACAGAACGAT 400
|||.||..|.|||||||||||||||||.|||||.||||||||.|||||.|
RBAM_032680__ 351 CACGGGACTGAAAATGGACTTTTTCTCCGTACCGTTTTTAACGGAACGTT 400
BSNT_05407___ 401 TTGAGTTAGGATGGATGGCTTATCCGCTGACGGTATTATGGATTGTCGGC 450
|.||.||.||||||.|.|||||.||||||||.||.||||||||.|||||.
RBAM_032680__ 401 TAGAATTGGGATGGGTCGCTTACCCGCTGACTGTGTTATGGATCGTCGGT 450
BSNT_05407___ 451 ATCACGAACGCAATTAACCTGATTGATGGATTGGATGGCCTTGCTGCCGG 500
||.||||||||.||.|||||||||||.||.|||||.||.||.|||||.||
RBAM_032680__ 451 ATTACGAACGCGATGAACCTGATTGACGGTTTGGACGGACTCGCTGCTGG 500
BSNT_05407___ 501 TCTTTCTGTTATCGGCCTGTCAACGATCGCTGTCATGGCGCTATCCGGCG 550
.||.||.||.|||||.||.||.||.|||||.||.||||||.|.|||||.|
RBAM_032680__ 501 CCTGTCGGTCATCGGACTCTCCACTATCGCCGTTATGGCGTTGTCCGGAG 550
BSNT_05407___ 551 GAAAAGTGCTCATTCTGTCACTCTCATTAGTCGTTATTGCCAGCACGCTG 600
|.|||.|.||.|||||||||||.|||.|.|||||.||.|..|||||.||.
RBAM_032680__ 551 GGAAAATCCTTATTCTGTCACTTTCACTTGTCGTGATAGGAAGCACACTC 600
BSNT_05407___ 601 GGGTTTTTGTTTTACAACTTCCACCCGGCAAAAATCTTTATGGGAGATAC 650
||.|||||.|||||.||.||.|||||||||||.||.||||||||||||||
RBAM_032680__ 601 GGATTTTTATTTTATAATTTTCACCCGGCAAAGATATTTATGGGAGATAC 650
BSNT_05407___ 651 GGGATCACTTTTTTTAGGGTATA-GT-ATTTCGATTCTTTCATTATTAGG 698
.|||||.||.|||.|.|| ||| || ||.||..|.||.|||||||||||
RBAM_032680__ 651 CGGATCGCTCTTTCTCGG--ATACGTCATCTCAGTACTCTCATTATTAGG 698
BSNT_05407___ 699 CCTGTATAAAAGTGTCACATTGTTCAGTATCGTTATCCCGATTATTATAT 748
.||.|||||||||||.||.||.|||||||||.|.||.|||||.||.||.|
RBAM_032680__ 699 TCTTTATAAAAGTGTTACTTTATTCAGTATCATCATTCCGATCATCATTT 748
BSNT_05407___ 749 TAGGCGTACCGATTTTTGATACAACATTTGCTATCATCAGGAGAATATTA 798
|.|||||.||||||||||||||.|||||.||..||||||||.|.||.|||
RBAM_032680__ 749 TGGGCGTGCCGATTTTTGATACGACATTCGCCGTCATCAGGCGGATTTTA 798
BSNT_05407___ 799 AACAAACAGCCGATTTCAGCGCCTGATAAGTCGCATATTCACCATAGACT 848
||||||||||||||.|||||||||||||||||.|||||.|||||..|.||
RBAM_032680__ 799 AACAAACAGCCGATCTCAGCGCCTGATAAGTCACATATACACCACCGGCT 848
BSNT_05407___ 849 GATGGCCTTTGGCCTTTCACATCGGATGTCAGTC-TTAGTTATTTATTTG 897
|||||||||.||.||.|||||.||.|.|.|.||| ||| |.||||||||.
RBAM_032680__ 849 GATGGCCTTCGGGCTGTCACACCGCACGGCTGTCATTA-TCATTTATTTA 897
BSNT_05407___ 898 ATTGGATTTATTTTCAGTATCAGTGCGATTGTGCTTAAAAGTGCCACAAT 947
||.||.|||||||||||..|||||||.||..||||.|||||.||.||.||
RBAM_032680__ 898 ATCGGCTTTATTTTCAGCGTCAGTGCCATCCTGCTGAAAAGCGCGACCAT 947
BSNT_05407___ 948 TTGGCTTTCTTTGTTTATTATCTTCATTTTAATCATTTTTATGCAGATCA 997
.||||||||..||||||||||.||..|.||.||..|.||||||||.||||
RBAM_032680__ 948 ATGGCTTTCGCTGTTTATTATTTTTGTATTGATTGTATTTATGCAAATCA 997
BSNT_05407___ 998 TAGCAGAAGTGACAGGACTCGTAAATGAAAAATTTAAGCCGTTTACGAAG 1047
|||||||.||.|||||..|.|||||||||.|||||||.||.|||||.|||
RBAM_032680__ 998 TAGCAGAGGTCACAGGGTTAGTAAATGAACAATTTAAACCATTTACCAAG 1047
BSNT_05407___ 1048 TTTTATAAACGTCTGGTGAAAAGGAATTAA 1077
|||||.||..|..||||.||.|..||||||
RBAM_032680__ 1048 TTTTACAAGAGATTGGTAAAGAAAAATTAA 1077
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