Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05392 and RBAM_032620
See
Amino acid alignment /
Visit
BSNT_05392 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:52
# Commandline: needle
# -asequence dna-align/BSNT_05392___comFA.1.9828.seq
# -bsequence dna-align/RBAM_032620___comFA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05392___comFA-RBAM_032620___comFA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05392___comFA-RBAM_032620___comFA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05392___comFA
# 2: RBAM_032620___comFA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1515
# Identity: 933/1515 (61.6%)
# Similarity: 933/1515 (61.6%)
# Gaps: 252/1515 (16.6%)
# Score: 2621.5
#
#
#=======================================
BSNT_05392___ 1 --GT--GAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCTAGAGAATTGC 46
|| |||.|||| ||.|.|| ||||| |||..|||
RBAM_032620__ 1 ATGTCCGAAGGTGC---TTCAGAA----------TTTTC---AGAGGTGC 34
BSNT_05392___ 47 AGCAGA----CGCTTCGAAGCCGTCATTTGCTCAGGACTGAGCTCTCATT 92
.| || ...|||| ||||.|||||..|.||..|||||.|..|.||
RBAM_032620__ 35 GG--GATTTCTTTTTCG--GCCGGCATTTATTGAGATCTGAGGTACCGTT 80
BSNT_05392___ 93 TTCCGATGAGATGATTGAATGGCATATCAAG------------AATGGAT 130
||| ||||.|| ||.|||||| ||.|.||
RBAM_032620__ 81 TTC-----AGATCAT-------CACATCAAGCGTGTTACAGAAAAAGAAT 118
BSNT_05392___ 131 ATATCACTGCTGAAAATTCTAT-ATCC-----ATAAA----TA------- 163
||||.||.||.||....||.|| |||| |.||| ||
RBAM_032620__ 119 ATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTTACGTCTGC 168
BSNT_05392___ 164 -AACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCA--------- 203
||| |.|||||.||..|||||||
RBAM_032620__ 169 CAAC------------------GATGCGGTCAGTCTGATCAAGCCAGCTT 200
BSNT_05392___ 204 -GCGGTATTATTCTTTTTATCACTCATCTGGAAAGA-----ATAAGCTGT 247
||||.| ||||...|.| |.||||..||.| ||.|.| |
RBAM_032620__ 201 TGCGGCA------TTTTGGGCGC-CCTCTGCCAAAAGGCAGATTACC--T 241
BSNT_05392___ 248 ATTGCCGTTCCTGTGTCATGATGGGCAGAG-TGAGTGA--GGAGGTTCCT 294
||||||||.||||||||.|||||||.||.| ||| ||| .||..| |.
RBAM_032620__ 242 ATTGCCGTGCCTGTGTCGTGATGGGAAGGGCTGA-TGAACTGACAT--CA 288
BSNT_05392___ 295 TTATATTCATGGGAAGAGGAAAATGAACCAAACTGGCAGTCAATTAAACT 344
||||||||.|||.|..|.|...|||||...|.||||.||.|..|.||.||
RBAM_032620__ 289 TTATATTCTTGGAATCAAGCCCATGAAAACAGCTGGGAGCCTGTAAAGCT 338
BSNT_05392___ 345 GACATGGGACGGCAAGCTTTCAAGCGGACAGCAAAAA-------GCCGCC 387
..|.|||||.||.|..||..||..||||||| || ||||||
RBAM_032620__ 339 TTCTTGGGAAGGAACACTGACAGACGGACAG----AAGCGGGCGGCCGCC 384
BSNT_05392___ 388 AATGTTTTAATTGAAGCAATATCAAAAAAAG--AAGAGCTCCTCATCTGG 435
|...|.|..||.||.||| |||.|.|| |||||||..|..|.|||
RBAM_032620__ 385 ---GCGCTTACAGATGCGATA--AAAGAGAGACAAGAGCTGTTAGTATGG 429
BSNT_05392___ 436 GCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATAGAATC 485
|||||||||||..|.||.||||||||.|||||||||||.|||||.||.|.
RBAM_032620__ 430 GCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTT 479
BSNT_05392___ 486 AGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATG 535
.|||.|.|||||.||..||||.||.|||.|.||.||.||.||.||.||||
RBAM_032620__ 480 TGCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATG 529
BSNT_05392___ 536 TTGTATTAGAGCTTGCT-CCAAGGCTCAAGGCTGCCTTTCAGGGGGCTGA 584
|.|||.|.||.| |||| ||.||.||.||....||.|||.||...|..||
RBAM_032620__ 530 TCGTACTTGAAC-TGCTGCCGAGACTGAAAAAAGCATTTGAGAAAGTCGA 578
BSNT_05392___ 585 CATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGC 634
..||||.||..|.|||||.||.|||||.||||||||.||.||..|||||.
RBAM_032620__ 579 AGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGT 628
BSNT_05392___ 635 TTATGATTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCA--ATCG 682
|.||||||||.||..|.||.|||||..||||.||...||| || .|.|
RBAM_032620__ 629 TAATGATTTCAACCGCTCACCAGCTGATGCGCTACCGAGA--CATTTTTG 676
BSNT_05392___ 683 ATGTTATGATCATTGATGAAGTTGACGCTTTTCCATATTCCGCTGATCAA 732
||||.|||||.||.||||||||.||.||.|||||.|.|||.||.|||.|.
RBAM_032620__ 677 ATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCCGATGAG 726
BSNT_05392___ 733 ACCCTTCA-ATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCG 781
| |.||.| ||||||||||.|.|||||.||.||||||||||||.||||.|
RBAM_032620__ 727 A-CATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTG 775
BSNT_05392___ 782 TTTATTTAAGTGCAACACCTCCTAAAGA---ATTAAAAAGAAAAGCACTG 828
|||||.|||..|||| |||||..||| ||||||||..||.| |||
RBAM_032620__ 776 TTTATGTAACGGCAA---CTCCTTCAGACACATTAAAAAAGAAGG--CTG 820
BSNT_05392___ 829 AACGGACAGTT-----ACATTCAGTTCGCATCCCCGCAAGACACCACCGG 873
|| |.|.||| |.|..| ||.|||||.||.||.|||.|.||.|||
RBAM_032620__ 821 AA--GCCGGTTTGCTGAAAAGC-GTCCGCATACCGGCCAGATATCATCGG 867
BSNT_05392___ 874 AAACCTTTACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAA 923
|||||..|.||.||.|||||.|||.|.|||||.||.||.|||||||||||
RBAM_032620__ 868 AAACCCCTCCCGGAGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAA 917
BSNT_05392___ 924 -ATTAAACCGAAA--TAAAATTCCGCCAGCGGTGAAAAGATGGATAGAGT 970
.|| |.|||| .|||.|.|||| ||..||.| |.||||.|.||
RBAM_032620__ 918 GCTT---CAGAAAGGAAAACTGCCGC--GCTCTGTA---ACGGATTGGGT 959
BSNT_05392___ 971 -----------TT------CATGTAAAAGAAGGGAGGCCTGTTTTTTTAT 1003
|| |||.| |||.|||||.||||
RBAM_032620__ 960 CCGCCAAAAACTTCAATCACATCT------------GCCGGTTTTCTTAT 997
BSNT_05392___ 1004 TCGTTCCTTC------CGTTTCTATTCTGGAAAAGGCTGCTGCGTGCTTT 1047
|||||||.|| |||.| ||.|||||.|..|.|..|..|||
RBAM_032620__ 998 TCGTTCCGTCTGTACACGTAT------TGAAAAAGACAACGGATTATTTT 1041
BSNT_05392___ 1048 -AGAGGTGTTCATT----------GCCGAACCGCATCTGTGCACGCGGAA 1086
||| .||| ||.||| .|| ||.||.||||||
RBAM_032620__ 1042 CAGA------AATTAAACATACGGGCAGAA-GGC----GTACATGCGGAA 1080
BSNT_05392___ 1087 GACAAGCAT--AGAAAGGAGAAAGTGCAGCAATTCAGAGATGGTCAGCTC 1134
|||| ||| ||||||||.||||||.|.|..||||||.|.||.|.|||.
RBAM_032620__ 1081 GACA--CATTCAGAAAGGATAAAGTGAAACGGTTCAGAAACGGCCGGCTT 1128
BSNT_05392___ 1135 GATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAA 1184
||.||..|..|.||.||.||.||..|.||||||||.|||||.||.|||||
RBAM_032620__ 1129 GACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTCACCGTGCCCAA 1178
BSNT_05392___ 1185 GGTGCAAACGGGTGTACTAGGAGCGGAATCACCTATCTTTACGGAAAGCG 1234
.||.||.||..||||.||.||.||.|||.|||||||||||||.||.||||
RBAM_032620__ 1179 AGTTCAGACATGTGTCCTCGGCGCAGAAGCACCTATCTTTACTGAGAGCG 1228
BSNT_05392___ 1235 CACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATA-TGCGGA 1283
|.||.||.||.||.||.||.|||||.||..|||||.|..||.| |.|.|
RBAM_032620__ 1229 CGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAG- 1277
BSNT_05392___ 1284 CGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATG 1333
|||.||||||.|..|.|||||.|||||.|..||||...|.|||....|.|
RBAM_032620__ 1278 CGGTGATGTCGTCATGTTTCATTTCGGAATCACAAGCGGAATGAAAAAAG 1327
BSNT_05392___ 1334 CAAGAAAGCATATAAAAGAAATGAATGAATTGGCAGCAAAAGTTGAATGT 1383
|||.|||.||||||.||.|.|||||..|||||||| |||| ||.||
RBAM_032620__ 1328 CAAAAAAACATATAGAACATATGAACAAATTGGCA-CAAA-----AAAGT 1371
BSNT_05392___ 1384 ACA------GACTAG 1392
|.| ||||||
RBAM_032620__ 1372 AAATTGTTGGACTAG 1386
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.