Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05390 and RBAM_032610

See Amino acid alignment / Visit BSNT_05390 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:52
# Commandline: needle
#    -asequence dna-align/BSNT_05390___comFB.1.9828.seq
#    -bsequence dna-align/RBAM_032610___comFB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05390___comFB-RBAM_032610___comFB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05390___comFB-RBAM_032610___comFB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05390___comFB
# 2: RBAM_032610___comFB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 305
# Identity:     221/305 (72.5%)
# Similarity:   221/305 (72.5%)
# Gaps:          28/305 ( 9.2%)
# Score: 812.5
# 
#
#=======================================

BSNT_05390___      1 ATGCTTGTCAATTCAAAAGAAATCGTAATGAAAGAACTGCTCGACCGATA     50
                     |||||||||||||||||||||||||||.|.||.|||||.||||||||..|
RBAM_032610__      1 ATGCTTGTCAATTCAAAAGAAATCGTATTAAAGGAACTTCTCGACCGCCA     50

BSNT_05390___     51 TATGGACCAGCTTCATATGGCCTGTACTTGCCAAGTATGCCAAAACGATG    100
                     ||||...||||||||||||...||.||.||||..||||||.||||.||||
RBAM_032610__     51 TATGTCTCAGCTTCATATGAAATGCACATGCCGGGTATGCAAAAATGATG    100

BSNT_05390___    101 TATTGGCACTTTCTTTAAACAAAG-TGAGTCCATCCTACGTTACTGATTT    149
                     ||.||||||||||.||||||...| |||| ||..|.||.|||||.||   
RBAM_032610__    101 TACTGGCACTTTCATTAAACCGGGCTGAG-CCGGCATATGTTACAGA---    146

BSNT_05390___    150 TAAAAAGA---TCGCATATACGAAAGCTGAGCTGGTAGATAAACAAAAAA    196
                     ||||||||   |.||.|||.|.|||||.|||.|.||.||||||||.||||
RBAM_032610__    147 TAAAAAGAAAGTTGCTTATGCAAAAGCAGAGATAGTTGATAAACAGAAAA    196

BSNT_05390___    197 ACACAGCAATGCTTGTCATTTTGGCTGAATCTGCTGCAGTAGTTTCAGAG    246
                     |.||.||..|||||||||||.||||||||||.||.||..|.|||||.|..
RBAM_032610__    197 ATACGGCGCTGCTTGTCATTCTGGCTGAATCAGCGGCGATTGTTTCGGTT    246

BSNT_05390___    247 AGTCCAAGCGATTTATGTCAAAC----GAAGCAGGAGGAGGCATTCATAA    292
                     |.|||||||||.||.|||.||||    ||||.||           |.|||
RBAM_032610__    247 AATCCAAGCGAGTTCTGTGAAACTCGGGAAGGAG-----------CGTAA    285

BSNT_05390___    293 ACTGA    297
                          
RBAM_032610__    285 -----    285


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