Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05388 and RBAM_032590

See Amino acid alignment / Visit BSNT_05388 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:51
# Commandline: needle
#    -asequence dna-align/BSNT_05388___yvyF.1.9828.seq
#    -bsequence dna-align/RBAM_032590___yvyF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05388___yvyF-RBAM_032590___yvyF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05388___yvyF-RBAM_032590___yvyF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05388___yvyF
# 2: RBAM_032590___yvyF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 433
# Identity:     332/433 (76.7%)
# Similarity:   332/433 (76.7%)
# Gaps:          26/433 ( 6.0%)
# Score: 1252.0
# 
#
#=======================================

BSNT_05388___      1 ATGGGAGAACTGGCTAATTGTCCGAAATGCAATGCTTTATTTTTAAAAAC     50
                     |||||.|||.||||.||||||||.||||||||||||||||||||.|||||
RBAM_032590__      1 ATGGGTGAATTGGCGAATTGTCCAAAATGCAATGCTTTATTTTTTAAAAC     50

BSNT_05388___     51 AAAGCTGCAAACTGTATGTCAGGCGTGTATTAAGGAAGAAGAAAAATCAT    100
                     .||.|||||.||.||.||.|||||.||||||||.||||||||||||.|||
RBAM_032590__     51 GAACCTGCAGACCGTGTGCCAGGCATGTATTAAAGAAGAAGAAAAAGCAT    100

BSNT_05388___    101 TTGAGACTGTCTATAAATTTTTAAGAAAACAGGAAAACCGGCAATCAACT    150
                     ||||.||.||||||||||||||.|||||.|||...|||.|.||.||.||.
RBAM_032590__    101 TTGAAACCGTCTATAAATTTTTGAGAAAGCAGATCAACAGACAGTCGACG    150

BSNT_05388___    151 TTG-AGCCGGATAACTGAGGAAACAGGTGTGGAAGAAGAGCTGATATTGA    199
                     .|| || |.|||.||||||||||||||||||||.|||||||||||..|.|
RBAM_032590__    151 ATGCAG-CAGATCACTGAGGAAACAGGTGTGGATGAAGAGCTGATCCTCA    199

BSNT_05388___    200 AATTCATCAGGCAGAAGCGAATTCAGATCACTCATCTTCCTAATTTGGCA    249
                     |.||.||||..||.||..|.||||||||||..||.|||||.|||||||||
RBAM_032590__    200 AGTTTATCAAACAAAAAAGGATTCAGATCAGCCAGCTTCCGAATTTGGCA    249

BSNT_05388___    250 TACCCTTGTGAAAAGTGCGGGACATCGATTAGAGAA--GGCAAGTTCTGC    297
                     ||.|||||.||||.|||| |||.|||.|.| .||.|  ||.||.||.|||
RBAM_032590__    250 TATCCTTGCGAAAGGTGC-GGAAATCCAAT-CAGGACGGGGAAATTTTGC    297

BSNT_05388___    298 AAGGATTGCCAGTCCGATATTAAGGATCAAATGGATCATTTGAACCA---    344
                     |||...||.|||.|.||||||.||...|||.|.||.|||.|||||||   
RBAM_032590__    298 AAGTCCTGTCAGACAGATATTGAGTCGCAATTAGACCATATGAACCAAAA    347

BSNT_05388___    345 ------CGAGGATGCTCTGAAAATCGAGAAAG-AAAATAGTAAAAAAGAC    387
                           ||        ||| ||.|||| |.|| ||||.||||.|||||||
RBAM_032590__    348 AACAGCCG--------CTG-AATTCGA-AGAGAAAAACAGTACAAAAGAC    387

BSNT_05388___    388 ACATACTATGCCTATAATACCAAAAACAGCTGA    420
                     ||||||||||||||||||||||||||||.||||
RBAM_032590__    388 ACATACTATGCCTATAATACCAAAAACACCTGA    420


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