Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05388 and RBAM_032590
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:51
# Commandline: needle
# -asequence dna-align/BSNT_05388___yvyF.1.9828.seq
# -bsequence dna-align/RBAM_032590___yvyF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05388___yvyF-RBAM_032590___yvyF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05388___yvyF-RBAM_032590___yvyF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05388___yvyF
# 2: RBAM_032590___yvyF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 433
# Identity: 332/433 (76.7%)
# Similarity: 332/433 (76.7%)
# Gaps: 26/433 ( 6.0%)
# Score: 1252.0
#
#
#=======================================
BSNT_05388___ 1 ATGGGAGAACTGGCTAATTGTCCGAAATGCAATGCTTTATTTTTAAAAAC 50
|||||.|||.||||.||||||||.||||||||||||||||||||.|||||
RBAM_032590__ 1 ATGGGTGAATTGGCGAATTGTCCAAAATGCAATGCTTTATTTTTTAAAAC 50
BSNT_05388___ 51 AAAGCTGCAAACTGTATGTCAGGCGTGTATTAAGGAAGAAGAAAAATCAT 100
.||.|||||.||.||.||.|||||.||||||||.||||||||||||.|||
RBAM_032590__ 51 GAACCTGCAGACCGTGTGCCAGGCATGTATTAAAGAAGAAGAAAAAGCAT 100
BSNT_05388___ 101 TTGAGACTGTCTATAAATTTTTAAGAAAACAGGAAAACCGGCAATCAACT 150
||||.||.||||||||||||||.|||||.|||...|||.|.||.||.||.
RBAM_032590__ 101 TTGAAACCGTCTATAAATTTTTGAGAAAGCAGATCAACAGACAGTCGACG 150
BSNT_05388___ 151 TTG-AGCCGGATAACTGAGGAAACAGGTGTGGAAGAAGAGCTGATATTGA 199
.|| || |.|||.||||||||||||||||||||.|||||||||||..|.|
RBAM_032590__ 151 ATGCAG-CAGATCACTGAGGAAACAGGTGTGGATGAAGAGCTGATCCTCA 199
BSNT_05388___ 200 AATTCATCAGGCAGAAGCGAATTCAGATCACTCATCTTCCTAATTTGGCA 249
|.||.||||..||.||..|.||||||||||..||.|||||.|||||||||
RBAM_032590__ 200 AGTTTATCAAACAAAAAAGGATTCAGATCAGCCAGCTTCCGAATTTGGCA 249
BSNT_05388___ 250 TACCCTTGTGAAAAGTGCGGGACATCGATTAGAGAA--GGCAAGTTCTGC 297
||.|||||.||||.|||| |||.|||.|.| .||.| ||.||.||.|||
RBAM_032590__ 250 TATCCTTGCGAAAGGTGC-GGAAATCCAAT-CAGGACGGGGAAATTTTGC 297
BSNT_05388___ 298 AAGGATTGCCAGTCCGATATTAAGGATCAAATGGATCATTTGAACCA--- 344
|||...||.|||.|.||||||.||...|||.|.||.|||.|||||||
RBAM_032590__ 298 AAGTCCTGTCAGACAGATATTGAGTCGCAATTAGACCATATGAACCAAAA 347
BSNT_05388___ 345 ------CGAGGATGCTCTGAAAATCGAGAAAG-AAAATAGTAAAAAAGAC 387
|| ||| ||.|||| |.|| ||||.||||.|||||||
RBAM_032590__ 348 AACAGCCG--------CTG-AATTCGA-AGAGAAAAACAGTACAAAAGAC 387
BSNT_05388___ 388 ACATACTATGCCTATAATACCAAAAACAGCTGA 420
||||||||||||||||||||||||||||.||||
RBAM_032590__ 388 ACATACTATGCCTATAATACCAAAAACACCTGA 420
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