Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05385 and RBAM_032560
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:51
# Commandline: needle
# -asequence dna-align/BSNT_05385___flgK.1.9828.seq
# -bsequence dna-align/RBAM_032560___flgK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05385___flgK-RBAM_032560___flgK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05385___flgK-RBAM_032560___flgK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05385___flgK
# 2: RBAM_032560___flgK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1672
# Identity: 1026/1672 (61.4%)
# Similarity: 1026/1672 (61.4%)
# Gaps: 302/1672 (18.1%)
# Score: 2890.5
#
#
#=======================================
BSNT_05385___ 1 ATGACATCTACCTTTATGGGGCTTGAAACTGCAAGGCGGGCGTTAAGCGC 50
|||.||||.||.|||||||||||.|||||.||||||||.||.||.||.||
RBAM_032560__ 1 ATGCCATCGACTTTTATGGGGCTCGAAACAGCAAGGCGTGCATTGAGTGC 50
BSNT_05385___ 51 TCAGCAGGCAGCTTTAAGCACTACTGCAAATAACGTGGCAAATGCCAATA 100
.||||||.|.||.||.|||||...|.||||||||||.||||||||.||||
RBAM_032560__ 51 GCAGCAGACTGCATTGAGCACAGTTTCAAATAACGTTGCAAATGCAAATA 100
BSNT_05385___ 101 CTGATGGTTATACAAGACAGCGGGTCTCATTGGAGGCAACGGACTA---- 146
|.||.||.|||||.||.|||||.|||.|||| .|||..|||.|
RBAM_032560__ 101 CAGAAGGATATACGAGGCAGCGCGTCACATT----ACAATCGACAAGCCC 146
BSNT_05385___ 147 -TTTCCCTGCTGTATCTAAAAACGCAGAAAAAACAGCGGGACAAATGGGT 195
|.|||| ||.|||||.||||||...||....||.||.||.|||||.||.
RBAM_032560__ 147 TTATCCC-GCAGTATCAAAAAACAGTGATCTGACGGCCGGCCAAATCGGA 195
BSNT_05385___ 196 ACGGGCGTTCAAGGAAAA------TCAGTTGAGAGAATAAGAGATATCTT 239
||.|| ||.|||| |||||||||.|..|.|||||.|..||
RBAM_032560__ 196 ACAGG------AGTAAAAGCCGGTTCAGTTGAGCGCGTCAGAGACAGTTT 239
BSNT_05385___ 240 TCTTGACTACCAATACCGTCTTCAAA--ACAACAGTGCCGGATACTATGA 287
|.|.|||||.||.|||.|...|.||| ||||.|.| .||.|||||| |
RBAM_032560__ 240 TTTAGACTATCAGTACAGAACTGAAAATACAAAATT--AGGGTACTAT-A 286
BSNT_05385___ 288 CA-------CGAAGGCAAAAGCGCTGTCCCAAATGGAAGGCGTTTTAAAT 330
|| |.||..|| .||||.|||||||||||||| .||
RBAM_032560__ 287 CAGCCCGTTCCAATTCA------TTGTCACAAATGGAAGGCGT----CAT 326
BSNT_05385___ 331 GAAACGGA---TGAC---AGCGGCTTGAACAGTGTGCTCAATTCGTTTTG 374
|||| || |||| |.|||.||.|||.|...|||||.|||||||||
RBAM_032560__ 327 GAAA--GAGCTTGACGATAACGGATTAAACGGATCGCTCAGTTCGTTTTG 374
BSNT_05385___ 375 GAATTCTCTGCAGGAATTATCGAATAATAC---AAAT----GAAGAAAGT 417
||||.|.||.|||||..|..|||..|||.| |||| ||
RBAM_032560__ 375 GAATGCCCTTCAGGATCTGGCGACGAATCCGGAAAATACGGGA------- 417
BSNT_05385___ 418 GCACGTTCTGTTGTTGCTCGA--AAAGGACAAGCTGTAGCTGAAACGTTT 465
||.||.||.||| ||||..|| |..||| ||.||.|.||.||||..|||
RBAM_032560__ 418 GCGCGCTCAGTT-TTGCAGGAGCAGGGGA-AATCTCTTGCCGAAAGTTTT 465
BSNT_05385___ 466 AATTATATTTCTGAATCACTT--ACAAATGTCCAATC-----GA-ATTTA 507
||.|||||.||| |.|.||| ||.|| ||.|| || |||.|
RBAM_032560__ 466 AACTATATATCT--ACCTCTTTGACTAA----CATTCAGGGTGATATTAA 509
BSNT_05385___ 508 AAAGCA----GAGCTAAATACAACTGTGTTGGAT---GTCAATTCTCTGC 550
||||.| || .||.|||.| |||| |||||||| |
RBAM_032560__ 510 AAAGAACCTGGA---TAACACAGC------GGATCAGGTCAATTC----C 546
BSNT_05385___ 551 TTTCTCAGTTAAACAGTT--------TAAATAAGCAAATTGCACAAGTAG 592
.||||| ||.|||.| |.||.||.|||||||||..|||.|
RBAM_032560__ 547 ATTCTC----AATCAGCTGAATGACCTTAACAATCAAATTGCAGCAGTTG 592
BSNT_05385___ 593 AGCCGGTCGGGCTTCTTCCGAATGGCTTATATGACCAGCGAGATTTGC-- 640
|||||..|||..|.||.||.||||..||.||||||||..|||| |
RBAM_032560__ 593 AGCCGAGCGGTATGCTCCCTAATGATTTGTATGACCAAAGAGA----CAG 638
BSNT_05385___ 641 --TGATCGATAAATTATCCTCAATGGTTGATATCAAAG--TCAGCTACAA 686
||||.|||.|||||||.||.||||...||||.|||| ||| ||.||
RBAM_032560__ 639 ATTGATTGATCAATTATCTTCTATGGCAAATATAAAAGTTTCA--TATAA 686
BSNT_05385___ 687 CAAATCAGGCGGGAATGCACTT-GCATCTGCTGAAGGAACTGTATCAA-- 733
.||.||.|||||..|||| ||| ||..|||||||.||.||.| |.||
RBAM_032560__ 687 TAAGTCGGGCGGACATGC-CTTGGCGACTGCTGAGGGCACGG--TTAACG 733
BSNT_05385___ 734 TTGAAATCCTTGATAA----AAATAAACAGTCGCTAGGAACTGTTTTGGA 779
|.||| |||.|.| |||.||..|.||.||.||.||..|..|.||
RBAM_032560__ 734 TCGAA----TTGCTGAACGGAAACAACAATTCTCTCGGTACGCTGCTCGA 779
BSNT_05385___ 780 CGGTA----AAAATTACGAGGTTTCAGAACTTGCAGCCAACTATGATAAT 825
||||| ||||..| |||||||||.|...|..||||||.||.||.
RBAM_032560__ 780 CGGTAACACAAAAACA----GTTTCAGAAATGAAAATCAACTACGACAAG 825
BSNT_05385___ 826 GAAACTGGGTTAGTATCAAGTATTTCAATCGGGGATACAG-----CTGTG 870
||.|..||..|.||.||.|||.|.|||.|||| ||| |.|||
RBAM_032560__ 826 GACAGCGGCCTCGTGTCGAGTGTGTCAGTCGG-----CAGCAGTACGGTG 870
BSNT_05385___ 871 CAGGCGGAGTCCTTTAGCAGCAAGGGATCCCTTTTAGGATTTATAGAGTC 920
.|.|||||..|.||||.|.|.||.||.||.||||||||..||||.||.||
RBAM_032560__ 871 AATGCGGATGCATTTACCGGAAAAGGCTCACTTTTAGGTCTTATTGAATC 920
BSNT_05385___ 921 TTACGGGTATATAACAG-CAGACGGCCAAGAAAAGGGCGTATACCCGGAA 969
.|||||.||||| | ||.||||..|||||||.||..|.||.||.|||
RBAM_032560__ 921 ATACGGCTATAT----GTCAAACGGAGAAGAAAAAGGTCTTTATCCTGAA 966
BSNT_05385___ 970 ATGCTTTCTGATCTTGACAATATGGCGCTTGAATTCGCGAAAGCTTTCAA 1019
|||||..|.|.||||||||||||||||||....||.||..|.||.||.||
RBAM_032560__ 967 ATGCTGACGGCTCTTGACAATATGGCGCTGTCCTTTGCTGACGCGTTTAA 1016
BSNT_05385___ 1020 TGAAGTGCACAGAAATGGTGTGACCAAGAGCGGTGAACAAGGCGGAGACT 1069
||.|||.||...|||.||...||||.|.|..||.|||||.||.|.||..|
RBAM_032560__ 1017 TGCAGTTCATGAAAAAGGGAAGACCTATACAGGAGAACAGGGTGCAGCAT 1066
BSNT_05385___ 1070 TTTTTGATTTTACTGGCGGTGAAACTGAACCTGCCAAGGGCGCGGCGGGC 1119
||||||||||.|..||.|.||||.|.|..||.||.||.||.|||||.|..
RBAM_032560__ 1067 TTTTTGATTTCAGCGGTGTTGAAGCGGTGCCGGCAAAAGGTGCGGCAGCG 1116
BSNT_05385___ 1120 AAGATCAAAGTGGCTGACAGCATATTAGATTCAAAAGGCGCAAA-CATTG 1168
||.||.|||||...||||| ||| |.|||
RBAM_032560__ 1117 AAAATAAAAGTCAGTGACA----------------------AAATCCTTG 1144
BSNT_05385___ 1169 CTTTCTCACTGACTGGT------GCAGC------CAACG-----ATAA-- 1199
|.| || ||||.| ||||| .|||| |.||
RBAM_032560__ 1145 CGT-----CT-ACTGATAATATCGCAGCGTCGTTAAACGGAGAAAAAAGT 1188
BSNT_05385___ 1200 -----CGCAAATGCTACAAAATTAGCAAATGTTTTAAC----CGGTAAAA 1240
|.||||.||.|||||..|.|||...|| || |.|.||..
RBAM_032560__ 1189 GACGGCACAAACGCGACAAATCTTGCAGCCGT----ACAGAACAGCAAGC 1234
BSNT_05385___ 1241 TAACCATTAACGGTAAAGAAAC---------TAGTG--TTTTA-GATTAT 1278
|.||.||||||||| ||||| ||.|| ||||| ||
RBAM_032560__ 1235 TGACTATTAACGGT---GAAACCACTACAATTAATGACTTTTATGA---- 1277
BSNT_05385___ 1279 TATGCGGGTCTGATTGGCGAGCTAGGG-----AT---CGAAGCTCAAGAG 1320
||.| ||.||.||..|||| ||| || |.|| |||.|
RBAM_032560__ 1278 -ATCC----CTTATCGGAAAGCT-GGGCGTTAATTCACAAA----AAGCG 1317
BSNT_05385___ 1321 GCTAATC----GA------CTGGCGTCTAATACAGAAACA------CAGC 1354
||.|||| || ||| |.||.|||| ||||
RBAM_032560__ 1318 GCCAATCTTATGAACAACTCTG---------AAAGCAACACCCTTTCAGC 1358
BSNT_05385___ 1355 TTAATGATG--CTGACATAAACCGTCAGCAAATGAGCGCAGTTTCTTTAG 1402
.|||| |.||.|.||.|.||| ||.|||||.|||||||
RBAM_032560__ 1359 ----CGATGAACGGAGACAATCTGTC--------AGTGCAGTGTCTTTAG 1396
BSNT_05385___ 1403 ACGAAGAAATGACGAATATGATTCAATTCCAACACGCATACAATGCAGCT 1452
|.|||||||||||.|||||||||||.||.||.|||||.||.|||||.|||
RBAM_032560__ 1397 ATGAAGAAATGACAAATATGATTCAGTTTCAGCACGCTTATAATGCGGCT 1446
BSNT_05385___ 1453 GCAAGAATGGTGACTTTACAAGACGAATTACTTGATAAAGTGATCAACGG 1502
||..|.||..|.||..|.||.||.|||.||.|.||||||.|.||.|||||
RBAM_032560__ 1447 GCGCGGATCATAACGATGCAGGATGAAATATTCGATAAAATTATTAACGG 1496
BSNT_05385___ 1503 TATGGGTGTTGGAGGAAGGTAG 1524
||||||....||||||||.|||
RBAM_032560__ 1497 TATGGGCACCGGAGGAAGATAG 1518
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