Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05382 and RBAM_032530

See Amino acid alignment / Visit BSNT_05382 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:51
# Commandline: needle
#    -asequence dna-align/BSNT_05382___fliW.1.9828.seq
#    -bsequence dna-align/RBAM_032530___yviF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05382___fliW-RBAM_032530___yviF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05382___fliW-RBAM_032530___yviF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05382___fliW
# 2: RBAM_032530___yviF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 436
# Identity:     306/436 (70.2%)
# Similarity:   306/436 (70.2%)
# Gaps:           8/436 ( 1.8%)
# Score: 981.0
# 
#
#=======================================

BSNT_05382___      1 ATGATCATTCATACGAAGTACCATGGCCAAATGAACATAAAAGAAGAACA     50
                     |||||.|||.|.||.||.||.||.||..||||.|..|||.|.||||..||
RBAM_032530__      1 ATGATAATTAAAACAAAATATCACGGAGAAATCAGAATAGACGAAGGGCA     50

BSNT_05382___     51 AATCATTCT-TTTTGAAAGCGGGATTCCAGGCTTTTTAGAAGAAAAACAG     99
                     .||.| ||| .|||||||.|||..|.||.||.|||...||.||.|..||.
RBAM_032530__     51 GATTA-TCTCATTTGAAAACGGCCTGCCGGGATTTAATGACGAGACTCAA     99

BSNT_05382___    100 TTCGTCATACTTCCGCTTTCAGAAGACTCTCCATTCGTGGCACTGCAGTC    149
                     ||.||..|.|||||..|.||.|||||.||.||.||..||||.||||||||
RBAM_032530__    100 TTTGTTGTTCTTCCTTTGTCGGAAGATTCACCGTTTTTGGCGCTGCAGTC    149

BSNT_05382___    150 CGTC--ACTTCAGAAAATCTTGCGTTTATCGTCGTAAGTCCGTTTATCTT    197
                     .|||  ||...||.|.|||  ||.|||||.||||..|||||||||||.||
RBAM_032530__    150 TGTCAAACAGGAGCACATC--GCCTTTATTGTCGCCAGTCCGTTTATTTT    197

BSNT_05382___    198 TTTTAAGAATTATGAATTTGATCTTGATGAATCAACTGC-TGAACTTTTG    246
                     .|||||....||.||||||||..||||..|..|.|| || ||||||||||
RBAM_032530__    198 CTTTAAAGGGTACGAATTTGACATTGACCATGCGAC-GCTTGAACTTTTG    246

BSNT_05382___    247 GATATCGATAATATTCAAGACGTAGAAGTCATGACAATATTGACTATGGC    296
                     .||||.||..||||..|.|||||.|||||.|||.|.||.||.||..|||.
RBAM_032530__    247 CATATTGAAGATATAGAGGACGTCGAAGTGATGGCGATTTTAACGCTGGA    296

BSNT_05382___    297 AGAGCCATTTGAAAAGTCTACTGCGAATTTATTGGCTCCCATTATTGTGA    346
                     ||||||.||||||||..|.||.||.||||||...||.||.|||||.||.|
RBAM_032530__    297 AGAGCCTTTTGAAAACACGACCGCCAATTTAAAAGCGCCGATTATCGTCA    346

BSNT_05382___    347 ATCGCAAGAACATGATGGCTAAGCAAGTCGTTTTACACGACTCCTCATAT    396
                     ||...|||.|.||||.|||.||.|||.||.|||||||.||..|.||.|||
RBAM_032530__    347 ATAAAAAGGAAATGAAGGCGAAACAAATCATTTTACATGATGCTTCCTAT    396

BSNT_05382___    397 ACGACAAAGCATCCGATTGGAGGAGAATCATGCTAG    432
                     ...|||||.||||.|||.|||||||.||||||||||
RBAM_032530__    397 GAAACAAAACATCTGATAGGAGGAGGATCATGCTAG    432


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