Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05380 and RBAM_032510
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:51
# Commandline: needle
# -asequence dna-align/BSNT_05380___hag.1.9828.seq
# -bsequence dna-align/RBAM_032510___hag.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05380___hag-RBAM_032510___hag.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05380___hag-RBAM_032510___hag.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05380___hag
# 2: RBAM_032510___hag
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 994
# Identity: 608/994 (61.2%)
# Similarity: 608/994 (61.2%)
# Gaps: 239/994 (24.0%)
# Score: 1990.5
#
#
#=======================================
BSNT_05380___ 1 ATGAGAATTAACCACAATATCGCAGCGCTTAACAC---------ACTGAA 41
||||||||.||||||||||||||.||.|||||||| .|||||
RBAM_032510__ 1 ATGAGAATCAACCACAATATCGCGGCTCTTAACACTAGCCGTCAGCTGAA 50
BSNT_05380___ 42 CCGTTTGTC---TTCAAACAACGGTGCGAGCCAAAAGAACATGGAGAAAC 88
|| | |||||||...|.||| |||.||||||||.|||.
RBAM_032510__ 51 -----TG-CAGGTTCAAACTCTGCTGC------AAAAAACATGGAAAAAT 88
BSNT_05380___ 89 TGTCTTCAGGTCTTCGTATCAACCGTGCGGGAGATGACGCAGCGGGTCTT 138
|.||||||||||||||.||||||||.||.||.||||||||.|||||||||
RBAM_032510__ 89 TATCTTCAGGTCTTCGCATCAACCGCGCTGGTGATGACGCTGCGGGTCTT 138
BSNT_05380___ 139 GCGATTTCTGAAAAAATGAGAGGACAAATCAGAGGTCTTGAAATGGCTTC 188
|||||.||||||||||||.|....||||||.|.|||.|.||.||||||||
RBAM_032510__ 139 GCGATCTCTGAAAAAATGCGTTCCCAAATCCGCGGTTTAGACATGGCTTC 188
BSNT_05380___ 189 TAAAAACTCTCAAGACGGAATTTCTCTTATCCAAACAGCTGAGGGTGCAT 238
|||||||.|||||||||||||.||||||||||||||.|||||||||||||
RBAM_032510__ 189 TAAAAACGCTCAAGACGGAATCTCTCTTATCCAAACGGCTGAGGGTGCAT 238
BSNT_05380___ 239 TGACTGAAACTCACTCTATTCTTCAACGTGTTCGTGAACTAG-TTGTT-- 285
|.|..|||||||||...||||||||.||| .|||.|.|| |||.|
RBAM_032510__ 239 TAAACGAAACTCACAGCATTCTTCAGCGT----ATGAGCGAGCTTGCTAC 284
BSNT_05380___ 286 -CAAGCAGGAAAC-ACAGGTACTCAAGATGGTACTGACCTTCAAGCGATC 333
|||||.|..||| |||.|.||.| |..|.||||||.|...|.|.|.
RBAM_032510__ 285 ACAAGCGGCTAACGACACGAACAC----TACTTCTGACCGTGCTGAGTTA 330
BSNT_05380___ 334 CAAGACGA----GATCA-----CTTCACTTGTTGAAGAAATCGGTGGCGG 374
|||.|.|| ||||| |||| |||||.||
RBAM_032510__ 331 CAAAAAGAAATGGATCAGCTTTCTTC------TGAAGTAA---------- 364
BSNT_05380___ 375 AACAAACGCTAACGGTATCTCT---GACCGTACTGAGTTTAACGGTAAAA 421
||| |.||.||| ||| ||.||.||.|||...||.|
RBAM_032510__ 365 --------CTA---GAATTTCTACAGAC---ACAGAATTCAACACAAAGA 400
BSNT_05380___ 422 AACTTCTTAATGGCGATTTCTCGCAAGCTAGCGGTAAATCA-TTAACATT 470
||.|.|||.|||| || |.|.||.|.| .|.||.||
RBAM_032510__ 401 AATTACTTGATGG---------------TA-CAGCAACTGACCTGACTTT 434
BSNT_05380___ 471 CCAAATCGGAGCTAACAGCAGTCAACAGCTTTCTGTCAACATTGAAAGCA 520
|||||||||.|| ||.||||
RBAM_032510__ 435 CCAAATCGGTGC---------------------------CAATGAA---- 453
BSNT_05380___ 521 TGGCAGCTACAGCAATTGGTGCTTTAGATACAGACGGTACGACACTTCTT 570
||| ||.|| ||.||.||||
RBAM_032510__ 454 -----------------GGT----------CAAAC--TATGAAACTT--- 471
BSNT_05380___ 571 ACTGGACAAGCAGTATCTGACATCGACGTAACAAAAT------TTAAAGA 614
|| |..|||.||||| |.||||
RBAM_032510__ 472 ----------------------TC-AATTAATAAAATGGATTCTGAAAG- 497
BSNT_05380___ 615 TAATGCGGCTGACACTGCTACTGTAGGA--------------TTC----- 645
|..|||.|.||..||||||||||.|||| |||
RBAM_032510__ 498 TCTTGCTGTTGGGACTGCTACTGCAGGAATTGATATCTCTACTTCCGCAG 547
BSNT_05380___ 646 -----------AATGCT----CAAC--TTAAAACAGTTGATGACGCAATC 678
|.|||| |||| |.|||||| ||.|||
RBAM_032510__ 548 ATGCAGCATCTACTGCTCTTACAACAATCAAAACA---------GCTATC 588
BSNT_05380___ 679 AACACAGTTTCTAAAC-AACGTTCAAAATTAGGTGCGGTACAAAACCGTC 727
.|||||||||| ||.| |.||..|.|||.|.||||||||.|||||||||.
RBAM_032510__ 589 GACACAGTTTC-AAGCGAGCGCGCTAAACTTGGTGCGGTTCAAAACCGTT 637
BSNT_05380___ 728 TTGAGCACACAATCAACAACTTAAGCGCTTCTGGTGAAAACCTGACTGCT 777
|.||||||||||||||||||.|..|..|||||..|||.|||||||||.||
RBAM_032510__ 638 TAGAGCACACAATCAACAACCTTGGTACTTCTTCTGAGAACCTGACTTCT 687
BSNT_05380___ 778 GCTGAGTCTCGTATCCGTGACGTTGACATGGCGAAAGAAATGAGCGAGTT 827
|||||.||.||||||||||||||.||||||||....||.||||..||||.
RBAM_032510__ 688 GCTGAATCACGTATCCGTGACGTAGACATGGCTTCTGAGATGATGGAGTA 737
BSNT_05380___ 828 CACAAAGAACAACATTCTTTCTCAGGCTTCTCAAGCGATGCTGGCTCAAG 877
|||.||.||||||||.|||.||||||||||||||||.|||||.||.||||
RBAM_032510__ 738 CACGAAAAACAACATCCTTACTCAGGCTTCTCAAGCTATGCTTGCGCAAG 787
BSNT_05380___ 878 CAAACCAACAACCGCAAAACGTACTTCAATTATT---ACGTTAA 918
|.||||||||.||.||..|.||.||||||||..| |.|||||
RBAM_032510__ 788 CTAACCAACAGCCTCAGCAAGTTCTTCAATTGCTGAAAGGTTAA 831
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